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The map label for this gene is ytxD [H]

Identifier: 118581871

GI number: 118581871

Start: 3835166

End: 3835915

Strand: Reverse

Name: ytxD [H]

Synonym: Ppro_3471

Alternate gene names: 118581871

Gene position: 3835915-3835166 (Counterclockwise)

Preceding gene: 118581872

Following gene: 118581870

Centisome position: 95.71

GC content: 58.93

Gene sequence:

>750_bases
ATGGACTTAGCAACCATCATAGGTTTGGTAATGGGCTTCGGCGCCGTATTCGGCGGCGCGGTCCTGGAAGGGCTGCACTT
ATCCGCCCTGATTCAGCCGACCGCGGCCTTGATCGTACTTGGTGGCACCTTCGGCGCCACGTTCGTCTGTTTTCCGCTAT
CTGCCATCATCAAGGCTTTCAAGGATGTCAAGATAGCCTTCCTGCCGGCCAATGTGGATCACGAATCGGTCGTCAAGGAC
ATCATAAACTACGCCACCAAGGCCCGCCGCAACGGCCTCATCTCCCTGGAGCAGGAGGCCCAAACGGCCAAAGACCCCTT
CGTCAAGAAGGGGATATCGCTGGTGGTTGACGGCATCGACCCCCAGAAGCTGCGGGAGACCCTGGAGGCGGACATCACCG
CTTTCGAGGATCACAGCAAGCACAGCGTGGAGTTCTACGAGGCGGCCGGCGGTTTCTCCCCCACTATCGGTATCATCGGC
GCCGTGCTCGGTCTGATTCATGTCATGAGCAACCTCTCCGACACCTCGAAGCTGGGTGCCGGCATCGCCGTGGCCTTCGT
TGCCACCATCTACGGTCTGATGGTGGCCAACATCATCTGTCTCCCCATCGGCACCAAGCTCAAGATTCGTATGAAGGAAG
AGGTCCTGCGCCGCGTCATGATTTTGGAGGGACTGATCGCCATCCAGAACGGCGAGAACCCGCACTTCATCGAGCAGAAA
CTGAAGGCCTTCGCGGGAGGGGAGCACTGA

Upstream 100 bases:

>100_bases
CCAATGTCTCTTTCGCAGCGCGATCCAGAGCCGCGACATCACTCCTGTGGAGCGCACCTTCCAGACCGCGGCACAACCTC
ACACCCGGGATTTCTGACAT

Downstream 100 bases:

>100_bases
TCCGCCATGGCACGGAAGAAAGAACCGGAAAAACACGTCAACCACGAACGCTGGCTGGTCTCCTACGCCGACTTCATCAC
GCTCCTCTTCGCGGTGTTCG

Product: MotA/TolQ/ExbB proton channel

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MDLATIIGLVMGFGAVFGGAVLEGLHLSALIQPTAALIVLGGTFGATFVCFPLSAIIKAFKDVKIAFLPANVDHESVVKD
IINYATKARRNGLISLEQEAQTAKDPFVKKGISLVVDGIDPQKLRETLEADITAFEDHSKHSVEFYEAAGGFSPTIGIIG
AVLGLIHVMSNLSDTSKLGAGIAVAFVATIYGLMVANIICLPIGTKLKIRMKEEVLRRVMILEGLIAIQNGENPHFIEQK
LKAFAGGEH

Sequences:

>Translated_249_residues
MDLATIIGLVMGFGAVFGGAVLEGLHLSALIQPTAALIVLGGTFGATFVCFPLSAIIKAFKDVKIAFLPANVDHESVVKD
IINYATKARRNGLISLEQEAQTAKDPFVKKGISLVVDGIDPQKLRETLEADITAFEDHSKHSVEFYEAAGGFSPTIGIIG
AVLGLIHVMSNLSDTSKLGAGIAVAFVATIYGLMVANIICLPIGTKLKIRMKEEVLRRVMILEGLIAIQNGENPHFIEQK
LKAFAGGEH
>Mature_249_residues
MDLATIIGLVMGFGAVFGGAVLEGLHLSALIQPTAALIVLGGTFGATFVCFPLSAIIKAFKDVKIAFLPANVDHESVVKD
IINYATKARRNGLISLEQEAQTAKDPFVKKGISLVVDGIDPQKLRETLEADITAFEDHSKHSVEFYEAAGGFSPTIGIIG
AVLGLIHVMSNLSDTSKLGAGIAVAFVATIYGLMVANIICLPIGTKLKIRMKEEVLRRVMILEGLIAIQNGENPHFIEQK
LKAFAGGEH

Specific function: May be involved in some transport function [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

Organism=Escherichia coli, GI1788199, Length=272, Percent_Identity=23.8970588235294, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 26510; Mature: 26510

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLATIIGLVMGFGAVFGGAVLEGLHLSALIQPTAALIVLGGTFGATFVCFPLSAIIKAF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHH
KDVKIAFLPANVDHESVVKDIINYATKARRNGLISLEQEAQTAKDPFVKKGISLVVDGID
HCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCHHHHCCHHEEECCCC
PQKLRETLEADITAFEDHSKHSVEFYEAAGGFSPTIGIIGAVLGLIHVMSNLSDTSKLGA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
GIAVAFVATIYGLMVANIICLPIGTKLKIRMKEEVLRRVMILEGLIAIQNGENPHFIEQK
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHEECCCCCHHHHHH
LKAFAGGEH
HHHHCCCCC
>Mature Secondary Structure
MDLATIIGLVMGFGAVFGGAVLEGLHLSALIQPTAALIVLGGTFGATFVCFPLSAIIKAF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHH
KDVKIAFLPANVDHESVVKDIINYATKARRNGLISLEQEAQTAKDPFVKKGISLVVDGID
HCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCHHHHCCHHEEECCCC
PQKLRETLEADITAFEDHSKHSVEFYEAAGGFSPTIGIIGAVLGLIHVMSNLSDTSKLGA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
GIAVAFVATIYGLMVANIICLPIGTKLKIRMKEEVLRRVMILEGLIAIQNGENPHFIEQK
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHEECCCCCHHHHHH
LKAFAGGEH
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8200532 [H]