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The map label for this gene is nifB [H]

Identifier: 118581863

GI number: 118581863

Start: 3824943

End: 3825812

Strand: Direct

Name: nifB [H]

Synonym: Ppro_3463

Alternate gene names: 118581863

Gene position: 3824943-3825812 (Clockwise)

Preceding gene: 118581861

Following gene: 118581864

Centisome position: 95.43

GC content: 60.8

Gene sequence:

>870_bases
ATGACACAAGCATGCGACATGAAGAGAAAAATCCAGGGGCACCCCTGCTTTGGCGGAAACCATCACAAAAACGGTCGGAT
GCACCTGGCAGTGGCGCCGGGCTGCAACATCAAGTGCGGCTACTGTACCCGCAGGCACGACTGCGCCAATGAATCCAGGC
CCGGCGTCACCAGCCGCCTGCTCACGCCGTCGGAGGCGCTGGTGAAGGTGCGCGAGGTCATGGCCAGCCCGGTGGTGGGG
CCAATCATCAAGGTTATCGGCATTGCCGGACCGGGCGACCCCCTGGCCAACGAGGAAACCTTCGAGACCTTCGAACTGGT
CAAGAGGGAGTTTCCCCACCTGATGCTCTGCATGAGCACCAACGGCCTGCTGCTGCCCGAGTCCATCGACCGCCTCCATG
AATTGGGTCTGCACAGCCTGACCGTTACCATCAACGCCATCGATGCCGGGGTGGGCGCATGGATCTATCGTCATGTCATC
TACCACGGCAGAAGCTACAGCGGTGTTGAAGGGGCGGCCATCCTGATCGCCAACCAGTTTGAAGGACTCAAGAGGGCAGC
TCGACTGGGCATGACCATCAAGGTCAACACGGTTCTCATCCCGGGGATCAACGAGGATCAGATCCCGCTGATCGCCGCCA
GGGTCAAGGAGTTGGGAGCCTTCGTGATGAACATCATGCCCCTGATTCCCCAGGCCGACCTGGCCCATATCCAGCGTCCC
TCAGAGGAGCATCTGGCCCAGGTGCGCAAGGCAAACGAAGGAATCATCGGACAGTTCAGCCACTGCAAGCAGTGCCGCGC
CGACGCCATCGGCCTGATCGGCAGTGATATGACGATCGGACAACCGGCATGCATGGCACCGCCAGCGTAG

Upstream 100 bases:

>100_bases
TGACCCATCGCAAACGGCATGGGCACATAGAGTATTCGCCAGGGCAACGGAGCCCGCGGGGATCACCCCGCGGGCTCTTT
TTTTTGAAAGGAGCAACACC

Downstream 100 bases:

>100_bases
GGGCCTCCCTTTCATGGATGTTTTCAGGGGCATGATAATCGGATCGTTTCAGCGGCATGAAATAGCGCAATTCCTGGCTC
TGGCCGCTGCCGAGCAGTGG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MTQACDMKRKIQGHPCFGGNHHKNGRMHLAVAPGCNIKCGYCTRRHDCANESRPGVTSRLLTPSEALVKVREVMASPVVG
PIIKVIGIAGPGDPLANEETFETFELVKREFPHLMLCMSTNGLLLPESIDRLHELGLHSLTVTINAIDAGVGAWIYRHVI
YHGRSYSGVEGAAILIANQFEGLKRAARLGMTIKVNTVLIPGINEDQIPLIAARVKELGAFVMNIMPLIPQADLAHIQRP
SEEHLAQVRKANEGIIGQFSHCKQCRADAIGLIGSDMTIGQPACMAPPA

Sequences:

>Translated_289_residues
MTQACDMKRKIQGHPCFGGNHHKNGRMHLAVAPGCNIKCGYCTRRHDCANESRPGVTSRLLTPSEALVKVREVMASPVVG
PIIKVIGIAGPGDPLANEETFETFELVKREFPHLMLCMSTNGLLLPESIDRLHELGLHSLTVTINAIDAGVGAWIYRHVI
YHGRSYSGVEGAAILIANQFEGLKRAARLGMTIKVNTVLIPGINEDQIPLIAARVKELGAFVMNIMPLIPQADLAHIQRP
SEEHLAQVRKANEGIIGQFSHCKQCRADAIGLIGSDMTIGQPACMAPPA
>Mature_288_residues
TQACDMKRKIQGHPCFGGNHHKNGRMHLAVAPGCNIKCGYCTRRHDCANESRPGVTSRLLTPSEALVKVREVMASPVVGP
IIKVIGIAGPGDPLANEETFETFELVKREFPHLMLCMSTNGLLLPESIDRLHELGLHSLTVTINAIDAGVGAWIYRHVIY
HGRSYSGVEGAAILIANQFEGLKRAARLGMTIKVNTVLIPGINEDQIPLIAARVKELGAFVMNIMPLIPQADLAHIQRPS
EEHLAQVRKANEGIIGQFSHCKQCRADAIGLIGSDMTIGQPACMAPPA

Specific function: Probably involved in the synthesis of the Fe-Mo cofactor [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the moaA/nifB/pqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR003731
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR005980
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02579 Nitro_FeMo-Co; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 31312; Mature: 31181

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQACDMKRKIQGHPCFGGNHHKNGRMHLAVAPGCNIKCGYCTRRHDCANESRPGVTSRL
CCCHHCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHC
LTPSEALVKVREVMASPVVGPIIKVIGIAGPGDPLANEETFETFELVKREFPHLMLCMST
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
NGLLLPESIDRLHELGLHSLTVTINAIDAGVGAWIYRHVIYHGRSYSGVEGAAILIANQF
CCEECHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHH
EGLKRAARLGMTIKVNTVLIPGINEDQIPLIAARVKELGAFVMNIMPLIPQADLAHIQRP
HHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
SEEHLAQVRKANEGIIGQFSHCKQCRADAIGLIGSDMTIGQPACMAPPA
CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TQACDMKRKIQGHPCFGGNHHKNGRMHLAVAPGCNIKCGYCTRRHDCANESRPGVTSRL
CCHHCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHC
LTPSEALVKVREVMASPVVGPIIKVIGIAGPGDPLANEETFETFELVKREFPHLMLCMST
CCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC
NGLLLPESIDRLHELGLHSLTVTINAIDAGVGAWIYRHVIYHGRSYSGVEGAAILIANQF
CCEECHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHH
EGLKRAARLGMTIKVNTVLIPGINEDQIPLIAARVKELGAFVMNIMPLIPQADLAHIQRP
HHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
SEEHLAQVRKANEGIIGQFSHCKQCRADAIGLIGSDMTIGQPACMAPPA
CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062178; 3029020 [H]