Click here to switch to the map view.

The map label for this gene is whiG [H]

Identifier: 118581847

GI number: 118581847

Start: 3807548

End: 3808300

Strand: Direct

Name: whiG [H]

Synonym: Ppro_3447

Alternate gene names: 118581847

Gene position: 3807548-3808300 (Clockwise)

Preceding gene: 118581846

Following gene: 118581848

Centisome position: 95.0

GC content: 53.39

Gene sequence:

>753_bases
ATGTCTTCCACCACTAAGGCATTCAACGACACCGACGAAACTGCCCCCCTCACCCGTGAGGAATTGATCGTAAAGCATAT
GCCCATGGCCCGCTACCTGGTGGCCAGGATTTCTCCTCAACTGCCGCCCCATCTCGATCAACAGGACCTGATGAGTGCGG
CAATGATTGGCCTGATACATGCTGCGGACCGATTCGATCCAAATCGGGGGGTTCTGTTCAAGACATTCGCCGAGCAACAC
ATTCGGGGCACGATTATCGACGAATTACGCTCATATGATGTGCTCAGCCGCACGATGCGCGACAAGTACAAGCGCCTGAG
CCGGCAACTGGTGAGTCTTGAGCATCAACTGGGACGCAATCCCACCAGCGAAGAGGTGGCTGAATCATTGGGAATCGGAC
TCGAGGAATACTATGAACTGCTGGACGACGTTCACGCCTACTCATTTATCAGTATTGACGACAGCTGGGATGATGATGAG
GGCAATAGCCTCTGTCTCGGTGATGTGCTGTGCGAGAGCGAAGCAAAAAGCCCCCAGCAGCAGGTCATGACGATGCAGCT
TGCCGAGGAGCTGGGAAAGGCAATTGATGCTTTGCCGGAAAAAGACCGTCTGGTTGTGACCCTCTACTACAAAGAGGATC
TCAGGCTAAAGGAGATCGGCGAGGCCATGGGATTGACCGAATCACGCATTTCCCAGATTCTCAGTCAGGCCATGGTCAGA
TTGAGGAGCAAGTTGAAGCTGCACAAGAACTAG

Upstream 100 bases:

>100_bases
TGGCCAAGCGGGTTATCGAATCAACGCGCCACAAGCGCCTCAAGGGTAATATTCAGTTTTTCTTCCGTCGCTTTCTTGAC
AATCCCACTGGCACCTGATC

Downstream 100 bases:

>100_bases
CATCTGGTGTGGTCACCGCTGACACAGCACCACCCGAAACTCAGACGGCACAACAAATGCATATATTTGTTAAGCCCAAA
GGAGACAGATAATGAACAGC

Product: FliA/WhiG family RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSSTTKAFNDTDETAPLTREELIVKHMPMARYLVARISPQLPPHLDQQDLMSAAMIGLIHAADRFDPNRGVLFKTFAEQH
IRGTIIDELRSYDVLSRTMRDKYKRLSRQLVSLEHQLGRNPTSEEVAESLGIGLEEYYELLDDVHAYSFISIDDSWDDDE
GNSLCLGDVLCESEAKSPQQQVMTMQLAEELGKAIDALPEKDRLVVTLYYKEDLRLKEIGEAMGLTESRISQILSQAMVR
LRSKLKLHKN

Sequences:

>Translated_250_residues
MSSTTKAFNDTDETAPLTREELIVKHMPMARYLVARISPQLPPHLDQQDLMSAAMIGLIHAADRFDPNRGVLFKTFAEQH
IRGTIIDELRSYDVLSRTMRDKYKRLSRQLVSLEHQLGRNPTSEEVAESLGIGLEEYYELLDDVHAYSFISIDDSWDDDE
GNSLCLGDVLCESEAKSPQQQVMTMQLAEELGKAIDALPEKDRLVVTLYYKEDLRLKEIGEAMGLTESRISQILSQAMVR
LRSKLKLHKN
>Mature_249_residues
SSTTKAFNDTDETAPLTREELIVKHMPMARYLVARISPQLPPHLDQQDLMSAAMIGLIHAADRFDPNRGVLFKTFAEQHI
RGTIIDELRSYDVLSRTMRDKYKRLSRQLVSLEHQLGRNPTSEEVAESLGIGLEEYYELLDDVHAYSFISIDDSWDDDEG
NSLCLGDVLCESEAKSPQQQVMTMQLAEELGKAIDALPEKDRLVVTLYYKEDLRLKEIGEAMGLTESRISQILSQAMVRL
RSKLKLHKN

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=224, Percent_Identity=40.1785714285714, Blast_Score=171, Evalue=3e-44,
Organism=Escherichia coli, GI1789448, Length=207, Percent_Identity=29.4685990338164, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789098, Length=211, Percent_Identity=28.436018957346, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 28469; Mature: 28338

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTTKAFNDTDETAPLTREELIVKHMPMARYLVARISPQLPPHLDQQDLMSAAMIGLIH
CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
AADRFDPNRGVLFKTFAEQHIRGTIIDELRSYDVLSRTMRDKYKRLSRQLVSLEHQLGRN
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTSEEVAESLGIGLEEYYELLDDVHAYSFISIDDSWDDDEGNSLCLGDVLCESEAKSPQQ
CCHHHHHHHHCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEHHHHHHHHHCCCHHH
QVMTMQLAEELGKAIDALPEKDRLVVTLYYKEDLRLKEIGEAMGLTESRISQILSQAMVR
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
LRSKLKLHKN
HHHHHHHCCC
>Mature Secondary Structure 
SSTTKAFNDTDETAPLTREELIVKHMPMARYLVARISPQLPPHLDQQDLMSAAMIGLIH
CCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
AADRFDPNRGVLFKTFAEQHIRGTIIDELRSYDVLSRTMRDKYKRLSRQLVSLEHQLGRN
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTSEEVAESLGIGLEEYYELLDDVHAYSFISIDDSWDDDEGNSLCLGDVLCESEAKSPQQ
CCHHHHHHHHCCCHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEHHHHHHHHHCCCHHH
QVMTMQLAEELGKAIDALPEKDRLVVTLYYKEDLRLKEIGEAMGLTESRISQILSQAMVR
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
LRSKLKLHKN
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]