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The map label for this gene is pal [H]

Identifier: 118581722

GI number: 118581722

Start: 3659900

End: 3660442

Strand: Reverse

Name: pal [H]

Synonym: Ppro_3322

Alternate gene names: 118581722

Gene position: 3660442-3659900 (Counterclockwise)

Preceding gene: 118581723

Following gene: 118581721

Centisome position: 91.33

GC content: 59.85

Gene sequence:

>543_bases
ATGACACTGTTGGCACTGTTGGCCATGGCGGCACTCATGTCTGCCGGATGCGCGAGCAATGAAGTCGTGAAGGCCGAAGA
ACCGGTTGTGGCGCCTGCCCAGACCGAGGCTCCTGCAGTTGAAGTTACCCAGCCCGCAGCGCCGGCAGCTCCCGTAGAGG
CTCCCAAGGTCGAAGAGACCGCCAAGGCCGACTCCGAAGCAGTTGCAGCCGCATTTGACGTCGCGTATTTTGACTTTGAT
AAATCCGACCTGCGCCAGGATGCCCGTGACGCGCTCTCCAAGAACGCGGATATCATGCTGAAAACAAACACCGCGGCCAA
CGTCAAGATCGAAGGTCACTGTGACGAGCGCGGTTCGGCCGAGTACAACATGGCTCTGGGTGAGCGACGCGCCAAGTCGG
CCCTGCAGTACCTGCTGACCCTGGGTGTGCCGTCGCAGCGTTTGTCCATCGTCAGCTATGGCGAAGAGAAACCGGCCGCA
CAGGGCGGCAATGAAGAGGCTTGGGCAAAGAACAGAAGGACTGAGTTCGTCGTCGTCAAGTAG

Upstream 100 bases:

>100_bases
AAGAAACATCCTGATGTATACTCTGCCAACATGATCTAGGCCAACCAAGGCGGTTAATTTCATAGTGTTAAAAAGGAGAC
GAACGATGAAACGAGGGATG

Downstream 100 bases:

>100_bases
CCCGAAAACCCATACGTATCAATCGAGCCGGAAAGCGCCCTGCGTTTTCCGGTTTTTTCGTTGTTCTCCTTGCCCGTGCA
ATCATGTACTATTCCGCGCA

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MTLLALLAMAALMSAGCASNEVVKAEEPVVAPAQTEAPAVEVTQPAAPAAPVEAPKVEETAKADSEAVAAAFDVAYFDFD
KSDLRQDARDALSKNADIMLKTNTAANVKIEGHCDERGSAEYNMALGERRAKSALQYLLTLGVPSQRLSIVSYGEEKPAA
QGGNEEAWAKNRRTEFVVVK

Sequences:

>Translated_180_residues
MTLLALLAMAALMSAGCASNEVVKAEEPVVAPAQTEAPAVEVTQPAAPAAPVEAPKVEETAKADSEAVAAAFDVAYFDFD
KSDLRQDARDALSKNADIMLKTNTAANVKIEGHCDERGSAEYNMALGERRAKSALQYLLTLGVPSQRLSIVSYGEEKPAA
QGGNEEAWAKNRRTEFVVVK
>Mature_179_residues
TLLALLAMAALMSAGCASNEVVKAEEPVVAPAQTEAPAVEVTQPAAPAAPVEAPKVEETAKADSEAVAAAFDVAYFDFDK
SDLRQDARDALSKNADIMLKTNTAANVKIEGHCDERGSAEYNMALGERRAKSALQYLLTLGVPSQRLSIVSYGEEKPAAQ
GGNEEAWAKNRRTEFVVVK

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=105, Percent_Identity=48.5714285714286, Blast_Score=107, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19111; Mature: 18979

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLALLAMAALMSAGCASNEVVKAEEPVVAPAQTEAPAVEVTQPAAPAAPVEAPKVEET
CHHHHHHHHHHHHHCCCCCCCEEECCCCEECCCCCCCCEEEEECCCCCCCCCCCCCCHHH
AKADSEAVAAAFDVAYFDFDKSDLRQDARDALSKNADIMLKTNTAANVKIEGHCDERGSA
HCCCHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCCCC
EYNMALGERRAKSALQYLLTLGVPSQRLSIVSYGEEKPAAQGGNEEAWAKNRRTEFVVVK
EEHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCCHHHHHCCCCEEEEEC
>Mature Secondary Structure 
TLLALLAMAALMSAGCASNEVVKAEEPVVAPAQTEAPAVEVTQPAAPAAPVEAPKVEET
HHHHHHHHHHHHHCCCCCCCEEECCCCEECCCCCCCCEEEEECCCCCCCCCCCCCCHHH
AKADSEAVAAAFDVAYFDFDKSDLRQDARDALSKNADIMLKTNTAANVKIEGHCDERGSA
HCCCHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCCCCCCC
EYNMALGERRAKSALQYLLTLGVPSQRLSIVSYGEEKPAAQGGNEEAWAKNRRTEFVVVK
EEHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCCHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]