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The map label for this gene is ybgF [C]

Identifier: 118581443

GI number: 118581443

Start: 3320439

End: 3321257

Strand: Direct

Name: ybgF [C]

Synonym: Ppro_3038

Alternate gene names: 118581443

Gene position: 3320439-3321257 (Clockwise)

Preceding gene: 118581441

Following gene: 118581450

Centisome position: 82.85

GC content: 57.02

Gene sequence:

>819_bases
ATGAAAACGAAATCAGCCATCATCCTGCTGTCGCTCTGCATTACCCTGACCGGATGCGCCACACAGGGTTCCCTCGATAC
GACCCGCAACGATATCAACGCCGTCAAGACCCGCCTGTTCTCCGTGGAAAAGGACATGGACGGAATCCGCGGCGAATCAA
AGGATCGCCTGGATGCTCTGGAACGAGAGATGAAATCCGAAATGGCCTCTGTCCGTAAGATAGCCGCCGATGTCCAGGCG
TCGGGAGAGACTACCAGGAACGAAATGCTGGCACTGAACGGCAAACTGGATGACATGTCGAAACCGGCCGACGAGCAGTC
GCGCTACCGCGAGGACACTGACAAGCGCATCATCTCCCTGGAAGAGCGGATCGTCAAACTCCAGGCAACGGTGGACGGCC
TTGTCGGAAAGGGCGCCGAGTCCGAGAAGTTCAAGGACGCCACGCCTCCCGCGGACGCCATCTACCTGAAAGGGCTGGAA
GCGTTCAAGGCCGGAAACATGCCCGCGGCCCGGGACTTTTTCGCCACGTTCATCGCAGAGCACCCCAAACACGAACTGGT
GGGCAACGCCCGCTACTGGACCGCCGAAGCGCTCTACGCAGAGAAGAATTATGAAGCGGCAATCGTCTCGTTCCAGGACG
TGATAAAAAATCACCCCAAACTGTCCAAGATCCCCGCTGCCATGCTCAAACAGGGCAGGGCCTTCAAGGCGATCAAGGAC
CCCAACAGCGCCAGATACGTGTTAAAAAAGTTGATTGCAACCTACCCCAAGAGTGAAGAGGCGAAGAGGGCCGGCGAACT
TCTCAAGGAGATCAAATAG

Upstream 100 bases:

>100_bases
CAGGGAACAGCACCACTGAATACCGTTTTCTTCCCGTATTGTCATGGCAAGCTCTTCCATGCTATACATGAGCAACATTT
TATCCCCAGGAGCAACTCCC

Downstream 100 bases:

>100_bases
CCGCCCCCGGCAGCAACCCAGCCTACCGCCCTTCCTTCTCGTTCCAGAGCGGGTTGTTCCTGTCGTCGGGGTGCAATTTG
GCTGTCTCAGCCGGATCCAC

Product: TPR domain-containing protein

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; TPR Domain-Containing Protein; Transmembrane Protein; TPR Domain Protein; L-Pal System Protein Ybgf; Tetratricopeptide Domain-Containing Protein; L-Pal System YbgF; Lipoprotein; TPR Repeat Protein; TPR Domain Family Protein; L System Periplasmic Component YbgF; Tetratricopeptide Repeat Family Protein; L-Pal Cell Envelope Complex Subunit YbgF; L-Pal Cell Envelope Complex Subunit YbgF Protein; Associated Tol-Pal Complex Protein; L System Periplasmic Component; Aspartyl/Asparaginyl Beta-Hydroxylase; Membrane Lipoprotein Lipid Attachment Site

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKTKSAIILLSLCITLTGCATQGSLDTTRNDINAVKTRLFSVEKDMDGIRGESKDRLDALEREMKSEMASVRKIAADVQA
SGETTRNEMLALNGKLDDMSKPADEQSRYREDTDKRIISLEERIVKLQATVDGLVGKGAESEKFKDATPPADAIYLKGLE
AFKAGNMPAARDFFATFIAEHPKHELVGNARYWTAEALYAEKNYEAAIVSFQDVIKNHPKLSKIPAAMLKQGRAFKAIKD
PNSARYVLKKLIATYPKSEEAKRAGELLKEIK

Sequences:

>Translated_272_residues
MKTKSAIILLSLCITLTGCATQGSLDTTRNDINAVKTRLFSVEKDMDGIRGESKDRLDALEREMKSEMASVRKIAADVQA
SGETTRNEMLALNGKLDDMSKPADEQSRYREDTDKRIISLEERIVKLQATVDGLVGKGAESEKFKDATPPADAIYLKGLE
AFKAGNMPAARDFFATFIAEHPKHELVGNARYWTAEALYAEKNYEAAIVSFQDVIKNHPKLSKIPAAMLKQGRAFKAIKD
PNSARYVLKKLIATYPKSEEAKRAGELLKEIK
>Mature_272_residues
MKTKSAIILLSLCITLTGCATQGSLDTTRNDINAVKTRLFSVEKDMDGIRGESKDRLDALEREMKSEMASVRKIAADVQA
SGETTRNEMLALNGKLDDMSKPADEQSRYREDTDKRIISLEERIVKLQATVDGLVGKGAESEKFKDATPPADAIYLKGLE
AFKAGNMPAARDFFATFIAEHPKHELVGNARYWTAEALYAEKNYEAAIVSFQDVIKNHPKLSKIPAAMLKQGRAFKAIKD
PNSARYVLKKLIATYPKSEEAKRAGELLKEIK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30173; Mature: 30173

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKSAIILLSLCITLTGCATQGSLDTTRNDINAVKTRLFSVEKDMDGIRGESKDRLDAL
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
EREMKSEMASVRKIAADVQASGETTRNEMLALNGKLDDMSKPADEQSRYREDTDKRIISL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
EERIVKLQATVDGLVGKGAESEKFKDATPPADAIYLKGLEAFKAGNMPAARDFFATFIAE
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
HPKHELVGNARYWTAEALYAEKNYEAAIVSFQDVIKNHPKLSKIPAAMLKQGRAFKAIKD
CCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHCC
PNSARYVLKKLIATYPKSEEAKRAGELLKEIK
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTKSAIILLSLCITLTGCATQGSLDTTRNDINAVKTRLFSVEKDMDGIRGESKDRLDAL
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
EREMKSEMASVRKIAADVQASGETTRNEMLALNGKLDDMSKPADEQSRYREDTDKRIISL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH
EERIVKLQATVDGLVGKGAESEKFKDATPPADAIYLKGLEAFKAGNMPAARDFFATFIAE
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
HPKHELVGNARYWTAEALYAEKNYEAAIVSFQDVIKNHPKLSKIPAAMLKQGRAFKAIKD
CCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHCC
PNSARYVLKKLIATYPKSEEAKRAGELLKEIK
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA