Click here to switch to the map view.

The map label for this gene is ycaC [C]

Identifier: 118581335

GI number: 118581335

Start: 3205313

End: 3205879

Strand: Direct

Name: ycaC [C]

Synonym: Ppro_2930

Alternate gene names: 118581335

Gene position: 3205313-3205879 (Clockwise)

Preceding gene: 118581328

Following gene: 118581343

Centisome position: 79.97

GC content: 61.02

Gene sequence:

>567_bases
ATGTCGCTGAAGGATACGTTTTTTCTGGATAGTGAAAAGGCCGCGCTGGTGGTGATCGATGTGCAGGACAAGCTGTGCCA
GGCCATGGATGAGAAGATGCTCGGCAAGCTGACCAAGAATGTGGGCATCCTGCTGGAGAGCGTCGCCGAACTGAAAATCC
CGGTGCTGTTCACCGAGCAGTATGTCAAGGGACTGGGCGCCACCCTGGCAGAACTGCTGGAGAAGGCCGCCGAGGCCCCC
CGCCTGGAGAAGATGACCTTCAGCTGCTGCGGCATCCCCCAGTTCATGGAAACTCTCAAGGCAAGCGGCCGCACCCAGAT
CATCATCACCGGCATGGAGACCCACGTCTGCGTGCTCCAGACGGTGATCGAGCTGCGCGAGGCCGGTTTCACGGTGCACC
TGGTGAAGGACGCCGTCATGAGCAGGGACAAGCGCAACTGGAAGGTGGCCGTGGAGGCCATGACCCTGGCCGGCGCGATC
CCCACCTGCACCGAGTCGGTTCTGTTCCAGCTGCTGAAGGTGGCCGGTACCGACGCATTCAAGAAGCTGTCCAAGCTGGT
GCGCTAG

Upstream 100 bases:

>100_bases
CGGACATGGCACCAGCCACAAGGCGCTTGCATTATGGCCCGAGCTGGGCAACAATGCGGCGTGGATGTACCATGCCCAAG
CCCATACAAGGAGATGAACC

Downstream 100 bases:

>100_bases
GAGCGGCTCGAGACAAAGCGGATACAAAAAGCGGGGCCAGACGGCACCCGCTTTTTTTGTGGAAAGGAGCGGACAGGAGG
GACGCTTCGGCTCCTCCCGG

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase Hydrolase Family Protein; Isochorismatase Superfamily Hydrolase; Nicotinamidase-Like Amidase; Isochorismatase Family Hydrolase; Isochorismatase Domain-Containing; Hydrolase; Amidase; Amidohydrolase; Amidase Related Nicotinamidase; YcaC Like Amidohydrolase; YcaC-Related Amidohydrolase; Isochorismatase Domain-Containing A; Isochorismatase Hydrolase Family; Hydrolase Isochorismatase Family; Nicotinamidase-Related Amidase

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSLKDTFFLDSEKAALVVIDVQDKLCQAMDEKMLGKLTKNVGILLESVAELKIPVLFTEQYVKGLGATLAELLEKAAEAP
RLEKMTFSCCGIPQFMETLKASGRTQIIITGMETHVCVLQTVIELREAGFTVHLVKDAVMSRDKRNWKVAVEAMTLAGAI
PTCTESVLFQLLKVAGTDAFKKLSKLVR

Sequences:

>Translated_188_residues
MSLKDTFFLDSEKAALVVIDVQDKLCQAMDEKMLGKLTKNVGILLESVAELKIPVLFTEQYVKGLGATLAELLEKAAEAP
RLEKMTFSCCGIPQFMETLKASGRTQIIITGMETHVCVLQTVIELREAGFTVHLVKDAVMSRDKRNWKVAVEAMTLAGAI
PTCTESVLFQLLKVAGTDAFKKLSKLVR
>Mature_187_residues
SLKDTFFLDSEKAALVVIDVQDKLCQAMDEKMLGKLTKNVGILLESVAELKIPVLFTEQYVKGLGATLAELLEKAAEAPR
LEKMTFSCCGIPQFMETLKASGRTQIIITGMETHVCVLQTVIELREAGFTVHLVKDAVMSRDKRNWKVAVEAMTLAGAIP
TCTESVLFQLLKVAGTDAFKKLSKLVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI103471987, Length=170, Percent_Identity=34.7058823529412, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI209969695, Length=139, Percent_Identity=33.0935251798561, Blast_Score=77, Evalue=6e-15,
Organism=Homo sapiens, GI13376007, Length=155, Percent_Identity=29.6774193548387, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17540156, Length=180, Percent_Identity=38.3333333333333, Blast_Score=106, Evalue=8e-24,
Organism=Drosophila melanogaster, GI19922924, Length=183, Percent_Identity=28.9617486338798, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI21357489, Length=184, Percent_Identity=32.6086956521739, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20695; Mature: 20564

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKDTFFLDSEKAALVVIDVQDKLCQAMDEKMLGKLTKNVGILLESVAELKIPVLFTEQ
CCCCCCEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHH
YVKGLGATLAELLEKAAEAPRLEKMTFSCCGIPQFMETLKASGRTQIIITGMETHVCVLQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCHHHHHHHH
TVIELREAGFTVHLVKDAVMSRDKRNWKVAVEAMTLAGAIPTCTESVLFQLLKVAGTDAF
HHHHHHHCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHH
KKLSKLVR
HHHHHHCC
>Mature Secondary Structure 
SLKDTFFLDSEKAALVVIDVQDKLCQAMDEKMLGKLTKNVGILLESVAELKIPVLFTEQ
CCCCCEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHH
YVKGLGATLAELLEKAAEAPRLEKMTFSCCGIPQFMETLKASGRTQIIITGMETHVCVLQ
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCHHHHHHHH
TVIELREAGFTVHLVKDAVMSRDKRNWKVAVEAMTLAGAIPTCTESVLFQLLKVAGTDAF
HHHHHHHCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHH
KKLSKLVR
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA