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The map label for this gene is tnpA1 [H]

Identifier: 118581263

GI number: 118581263

Start: 3127134

End: 3127526

Strand: Reverse

Name: tnpA1 [H]

Synonym: Ppro_2857

Alternate gene names: 118581263

Gene position: 3127526-3127134 (Counterclockwise)

Preceding gene: 118581264

Following gene: 118581262

Centisome position: 78.03

GC content: 45.55

Gene sequence:

>393_bases
ATGGACGACGCTCAAAGTTTATGTCACTCGAAATGGGATTGCAAGTATCACATCGTATGGGTTCCCAAATGTCGCCGTAA
GGTGTTGTACGGGCGGATTCGGAAACATCTTGCTGACTTGTTGCACTGTCTTGCGAGACAGAAAGAGTGCAAAATACAGG
AGGGTCACCTTCAACCTGACCATATTCACATATTGATATCGATCCCACCGAAATACTCTGTTGCACAGGTGATTGGCTTC
ATCAAGGGCAAGAGTGCCATCCATATTGCCCGAATGTATCTTGGTCAGAAGAAGAACTATACTGGCATGCACTTTTGGGC
ACGTGGTTACTTCGTATCAACCGTTGGTGCTGACGAGGAAATGAGGCTGATCAGAAAAATTGATGGAAATTAG

Upstream 100 bases:

>100_bases
CCCCGGCTGTGCCGGGGGACCCCCATAGTTTGACAGTTCCTGAAATATGGCGAAGCCTCCCTAACGTGAACCGCTCAAAG
TGCACGAAAAAGGAGGCTTC

Downstream 100 bases:

>100_bases
GCGAGAAATAGACGAGAAATGTGAGGAAAAGATGGAGAAGCCCCCTCACTTTTCTTGGCGGAATCGACGGGGGCTCCTCC
TTGCCCAGCAGGAATCAGGC

Product: transposase IS200-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MDDAQSLCHSKWDCKYHIVWVPKCRRKVLYGRIRKHLADLLHCLARQKECKIQEGHLQPDHIHILISIPPKYSVAQVIGF
IKGKSAIHIARMYLGQKKNYTGMHFWARGYFVSTVGADEEMRLIRKIDGN

Sequences:

>Translated_130_residues
MDDAQSLCHSKWDCKYHIVWVPKCRRKVLYGRIRKHLADLLHCLARQKECKIQEGHLQPDHIHILISIPPKYSVAQVIGF
IKGKSAIHIARMYLGQKKNYTGMHFWARGYFVSTVGADEEMRLIRKIDGN
>Mature_130_residues
MDDAQSLCHSKWDCKYHIVWVPKCRRKVLYGRIRKHLADLLHCLARQKECKIQEGHLQPDHIHILISIPPKYSVAQVIGF
IKGKSAIHIARMYLGQKKNYTGMHFWARGYFVSTVGADEEMRLIRKIDGN

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 15155; Mature: 15155

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDAQSLCHSKWDCKYHIVWVPKCRRKVLYGRIRKHLADLLHCLARQKECKIQEGHLQPD
CCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
HIHILISIPPKYSVAQVIGFIKGKSAIHIARMYLGQKKNYTGMHFWARGYFVSTVGADEE
EEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEECCCCHH
MRLIRKIDGN
HHHHHHCCCC
>Mature Secondary Structure
MDDAQSLCHSKWDCKYHIVWVPKCRRKVLYGRIRKHLADLLHCLARQKECKIQEGHLQPD
CCCHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
HIHILISIPPKYSVAQVIGFIKGKSAIHIARMYLGQKKNYTGMHFWARGYFVSTVGADEE
EEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEECCCCHH
MRLIRKIDGN
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]