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The map label for this gene is rnk [H]

Identifier: 118581250

GI number: 118581250

Start: 3110716

End: 3111144

Strand: Direct

Name: rnk [H]

Synonym: Ppro_2844

Alternate gene names: 118581250

Gene position: 3110716-3111144 (Clockwise)

Preceding gene: 118581245

Following gene: 118581252

Centisome position: 77.61

GC content: 59.91

Gene sequence:

>429_bases
GTGAAAAAACACACCACACAGAGACAGATTTTCATTACTGATTTCGACATGCAGCGCCTGGAGGAGTTGATCGAGGGCGC
GAAAGCCAGGGTATCCCGCGACAGCCGCAACATCGTGGAGCTCGAGCAGGAGTTGCACCGAGCGGACGTGGTGGCTCCCG
ACGGCATTCCGCCCGACGTGATCACCATGAACTCGCGCGTCTGCCTTCAGGATATGGATTCCGGGGAAGAGCTGGTCTAT
ACGCTGGTCTTTCCGGGGGACGCCAACCTGGAAAGCGGCAGGATTTCCGTGCTCGCGCCGGTTGGCACCGCCATGATCGG
CTACCGCACCGGCGACCGCATCAGCTGGCCCGTTCCCGGAGGAACGAAAAAGCTGAAGGTCAAAAAGGTCCTCTACCAGC
CTGAAGCGGCCGGCGACTTCCATCTCTAG

Upstream 100 bases:

>100_bases
TCCTCTCCGTTGCGCACTCAACTGAAAATACATACACGGACGACGCCATATCCGCCGACCAGGGCGGAACAACCACCATA
TACAGAAGGAGAGTTTTATC

Downstream 100 bases:

>100_bases
CGGCGCCGGCATGCCACGGGCGGAGCAGGAGCACGAAAAGACGCTCCCCGACTCCGCCTATGGCAGCCCGGCATTTCCAT
TCAGTTCGTCCGTTCCAGTT

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKKHTTQRQIFITDFDMQRLEELIEGAKARVSRDSRNIVELEQELHRADVVAPDGIPPDVITMNSRVCLQDMDSGEELVY
TLVFPGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPGGTKKLKVKKVLYQPEAAGDFHL

Sequences:

>Translated_142_residues
MKKHTTQRQIFITDFDMQRLEELIEGAKARVSRDSRNIVELEQELHRADVVAPDGIPPDVITMNSRVCLQDMDSGEELVY
TLVFPGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPGGTKKLKVKKVLYQPEAAGDFHL
>Mature_142_residues
MKKHTTQRQIFITDFDMQRLEELIEGAKARVSRDSRNIVELEQELHRADVVAPDGIPPDVITMNSRVCLQDMDSGEELVY
TLVFPGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPGGTKKLKVKKVLYQPEAAGDFHL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=135, Percent_Identity=42.2222222222222, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15836; Mature: 15836

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHTTQRQIFITDFDMQRLEELIEGAKARVSRDSRNIVELEQELHRADVVAPDGIPPDV
CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCE
ITMNSRVCLQDMDSGEELVYTLVFPGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPG
EEECCEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCEEECCCCC
GTKKLKVKKVLYQPEAAGDFHL
CCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKKHTTQRQIFITDFDMQRLEELIEGAKARVSRDSRNIVELEQELHRADVVAPDGIPPDV
CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCE
ITMNSRVCLQDMDSGEELVYTLVFPGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPG
EEECCEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCEEECCCCC
GTKKLKVKKVLYQPEAAGDFHL
CCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]