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The map label for this gene is yajD [H]

Identifier: 118581222

GI number: 118581222

Start: 3085225

End: 3085563

Strand: Direct

Name: yajD [H]

Synonym: Ppro_2816

Alternate gene names: 118581222

Gene position: 3085225-3085563 (Clockwise)

Preceding gene: 118581221

Following gene: 118581226

Centisome position: 76.98

GC content: 63.72

Gene sequence:

>339_bases
ATGGCGGGAAGATCGCGGGGCCCCAGAACGGTGAAGCTCCCCAGCGCAGCGGAGGCAGACGCCCTTTTACGGCGCATGCG
GGGCGAGGTGGAGAACAACAGCAACTACCGCACGAAATCGCTGAAGATCCATGGCCCGGTCTGCGCCAGGTGCGGTCGCC
AGTTCGACGCCGCCAGCATCAATCAATTGACCGTGCACCACCGGGACGGCAACCACCACAACAACCCTCCCGACGGAAGC
AACTGGGAGAATCTCTGCAACCACTGCCACGACGACGAGCATTCGCGCGGACTCCTGGGCGACTACCTGGAATCGGCGGA
AAAGCCGCACACGCGCTAG

Upstream 100 bases:

>100_bases
ATGTTCAACATCGAGCAGAACTTCGGCTGCCACAACATCATCGACTACTATGGCGACGGACTGTCCACAGTGAAACTGCT
GAACGCACAGGAGTAGGGAC

Downstream 100 bases:

>100_bases
AATTCAAGGTTAAGCTCGCTGCTGTAGCACTTCCTGTTTCGCGACAGGAAGGGAATCGTGCAGAGCCGGGGAGTACCGAT
GGTCACGCGGAACTCCTTCA

Product: HNH endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MAGRSRGPRTVKLPSAAEADALLRRMRGEVENNSNYRTKSLKIHGPVCARCGRQFDAASINQLTVHHRDGNHHNNPPDGS
NWENLCNHCHDDEHSRGLLGDYLESAEKPHTR

Sequences:

>Translated_112_residues
MAGRSRGPRTVKLPSAAEADALLRRMRGEVENNSNYRTKSLKIHGPVCARCGRQFDAASINQLTVHHRDGNHHNNPPDGS
NWENLCNHCHDDEHSRGLLGDYLESAEKPHTR
>Mature_111_residues
AGRSRGPRTVKLPSAAEADALLRRMRGEVENNSNYRTKSLKIHGPVCARCGRQFDAASINQLTVHHRDGNHHNNPPDGSN
WENLCNHCHDDEHSRGLLGDYLESAEKPHTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786611, Length=68, Percent_Identity=55.8823529411765, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002711
- InterPro:   IPR003615
- InterPro:   IPR015880 [H]

Pfam domain/function: PF01844 HNH [H]

EC number: NA

Molecular weight: Translated: 12559; Mature: 12428

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRSRGPRTVKLPSAAEADALLRRMRGEVENNSNYRTKSLKIHGPVCARCGRQFDAASI
CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHCCCCCCCCCC
NQLTVHHRDGNHHNNPPDGSNWENLCNHCHDDEHSRGLLGDYLESAEKPHTR
CEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AGRSRGPRTVKLPSAAEADALLRRMRGEVENNSNYRTKSLKIHGPVCARCGRQFDAASI
CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHCCCCCCCCCC
NQLTVHHRDGNHHNNPPDGSNWENLCNHCHDDEHSRGLLGDYLESAEKPHTR
CEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]