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The map label for this gene is gspD [C]

Identifier: 118581113

GI number: 118581113

Start: 2944165

End: 2945325

Strand: Reverse

Name: gspD [C]

Synonym: Ppro_2703

Alternate gene names: 118581113

Gene position: 2945325-2944165 (Counterclockwise)

Preceding gene: 118581114

Following gene: 118581112

Centisome position: 73.49

GC content: 50.9

Gene sequence:

>1161_bases
ATGAAACGTTCCGGAAAGTCAATTGTATTGTTCCCTGTCCTTCTTGCCATCGCGGTTATGCTGCTGTCGGGGATTGCCCT
TGCCGGAGTCCGGACACAGGTGATTGTCAACAAGAGCGTGCTGGTCAATCTGAAAAATCCGGCGGAAAGGGTTTCCATCG
CTAACCCTGCCATAGCTGACCTGCTGCTGATAACGCCGCGACAGATTCAGCTGAATGGCTTGGCTCTCGGCGCCACGTCC
CTGATTGTCTGGGAAAAAGGGGGCGAAAAGCCGCTCTTCTTCGATGTTAATGTGGTAGGCAACACGAATATTGACGATTC
CCAGCAGGTGCTCTTGCAGGTGAAGGTGGCGCAGATCGACAAGACCGCACTGAAAAACCTCGGTGTCAGCTTTCTGGTTA
AAAATCAAAATGCCAATGGTTTTTCCAATATGATCGGAGCTCCCTCAACCAGCTCAACCAGTGCGTCAGGCGACGGCACA
ATCAGTACAGCCAACGGAATAATTGACGGTTTTAGCAGTCTTAATCCCTATACCATGGGCATTACGCACTTCCCGAGTGG
TGTCAGTGCGGTGATAAAAGCGTTGGCAACCAAGGGCATGGCAAAAATCCTTGCCGAGCCGAATCTTGTGGTGAAAAGCG
GTCAGAAGGGAGAGTTTTTTGCCGGCAGCAGAATACCATTCAGTGTGCTTGAAAACACAGGAAGTACTTCGACTCCAAGT
ATCAGGTGGGAGGAAGTAGGGGTCAAACTGAATTTCAAGCCATTTGTCATGGAGAGCGGCACCATTGCCCTTGAACTCGA
TCCAGTTGAGGTGAGCAATATTCAGGGAACTCTTGAGACAAACGGTTATCCCGTAATAGACACCAGAACAATCAAGACTT
CGGCGGAGTTGAGGGATGGTGAAAGCCTTGTCCTGGCCGGACTGCTCCGTGATGAGACGTATAAGAGTATTTCAAAGGTC
CCGCTGCTGGGCGACATACCCATACTGGGGGCTCTGTTTAGAACTACGGAGAATGAACAGAAAGAAACGGAGCTGGTGTT
TTTCATCACCCCAAAGCTGGTCATGCCCGAGGTGCCGGGGGTCAAGGTTGAGCTGCCGACGGACAAGCAGCTTACTCCTG
AGCAGGAGAAGGAGTTCCAATGGATACCGATGACAAAATAG

Upstream 100 bases:

>100_bases
GCCGCCGCAGGTCGACACCGTTGAGATTATCAAGGGGACAAACAGGACGTCGAAACAGTACTGAGCCAAGAATGCTACCC
TTTTTCATGAGGTGACAGAT

Downstream 100 bases:

>100_bases
CTTCTTCGAACAAGAACAAAGGCTTCGTTGTTGTCTGGTTTGTGGTGTTGCTTCCGGTTGTACTGCTGTTTGCCGCCATG
GCGATGGATTTCAGCTACAT

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MKRSGKSIVLFPVLLAIAVMLLSGIALAGVRTQVIVNKSVLVNLKNPAERVSIANPAIADLLLITPRQIQLNGLALGATS
LIVWEKGGEKPLFFDVNVVGNTNIDDSQQVLLQVKVAQIDKTALKNLGVSFLVKNQNANGFSNMIGAPSTSSTSASGDGT
ISTANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAGSRIPFSVLENTGSTSTPS
IRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNGYPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKV
PLLGDIPILGALFRTTENEQKETELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEFQWIPMTK

Sequences:

>Translated_386_residues
MKRSGKSIVLFPVLLAIAVMLLSGIALAGVRTQVIVNKSVLVNLKNPAERVSIANPAIADLLLITPRQIQLNGLALGATS
LIVWEKGGEKPLFFDVNVVGNTNIDDSQQVLLQVKVAQIDKTALKNLGVSFLVKNQNANGFSNMIGAPSTSSTSASGDGT
ISTANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAGSRIPFSVLENTGSTSTPS
IRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNGYPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKV
PLLGDIPILGALFRTTENEQKETELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEFQWIPMTK
>Mature_386_residues
MKRSGKSIVLFPVLLAIAVMLLSGIALAGVRTQVIVNKSVLVNLKNPAERVSIANPAIADLLLITPRQIQLNGLALGATS
LIVWEKGGEKPLFFDVNVVGNTNIDDSQQVLLQVKVAQIDKTALKNLGVSFLVKNQNANGFSNMIGAPSTSSTSASGDGT
ISTANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAGSRIPFSVLENTGSTSTPS
IRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNGYPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKV
PLLGDIPILGALFRTTENEQKETELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEFQWIPMTK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=278, Percent_Identity=32.7338129496403, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789793, Length=255, Percent_Identity=30.1960784313725, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 41388; Mature: 41388

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSGKSIVLFPVLLAIAVMLLSGIALAGVRTQVIVNKSVLVNLKNPAERVSIANPAIAD
CCCCCCEEEHHHHHHHHHHHHHCCHHHHCCEEEEEEEEEEEEEECCCHHHEECCCCCCEE
LLLITPRQIQLNGLALGATSLIVWEKGGEKPLFFDVNVVGNTNIDDSQQVLLQVKVAQID
EEEECCCEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEEEEHHHHH
KTALKNLGVSFLVKNQNANGFSNMIGAPSTSSTSASGDGTISTANGIIDGFSSLNPYTMG
HHHHHHCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCEEEE
ITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAGSRIPFSVLENTGSTSTPS
EEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCHHHHHCCCCCCCCC
IRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNGYPVIDTRTIKTSAELRDG
EEEEEECEEECCCEEEEECCEEEEEECCEEECCCEEEEECCCEEEEEEEEEECCCCCCCC
ESLVLAGLLRDETYKSISKVPLLGDIPILGALFRTTENEQKETELVFFITPKLVMPEVPG
CEEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCEECCCCCC
VKVELPTDKQLTPEQEKEFQWIPMTK
EEEECCCCCCCCCCHHCCEEEECCCC
>Mature Secondary Structure
MKRSGKSIVLFPVLLAIAVMLLSGIALAGVRTQVIVNKSVLVNLKNPAERVSIANPAIAD
CCCCCCEEEHHHHHHHHHHHHHCCHHHHCCEEEEEEEEEEEEEECCCHHHEECCCCCCEE
LLLITPRQIQLNGLALGATSLIVWEKGGEKPLFFDVNVVGNTNIDDSQQVLLQVKVAQID
EEEECCCEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEEEEHHHHH
KTALKNLGVSFLVKNQNANGFSNMIGAPSTSSTSASGDGTISTANGIIDGFSSLNPYTMG
HHHHHHCCEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEECCHHHHHHCCCCCEEEE
ITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAGSRIPFSVLENTGSTSTPS
EEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECCCCCHHHHHCCCCCCCCC
IRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNGYPVIDTRTIKTSAELRDG
EEEEEECEEECCCEEEEECCEEEEEECCEEECCCEEEEECCCEEEEEEEEEECCCCCCCC
ESLVLAGLLRDETYKSISKVPLLGDIPILGALFRTTENEQKETELVFFITPKLVMPEVPG
CEEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCEECCCCCC
VKVELPTDKQLTPEQEKEFQWIPMTK
EEEECCCCCCCCCCHHCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]