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The map label for this gene is ydaM [H]

Identifier: 118581094

GI number: 118581094

Start: 2918943

End: 2920460

Strand: Direct

Name: ydaM [H]

Synonym: Ppro_2683

Alternate gene names: 118581094

Gene position: 2918943-2920460 (Clockwise)

Preceding gene: 118581093

Following gene: 118581095

Centisome position: 72.83

GC content: 57.84

Gene sequence:

>1518_bases
TTGGCCACAAAAGAGGGCGCCCCTGAGGTCAAGCCCGACAGACTCCTAGTGCTGACCATGCTGATGGCTCTCGTTCTCAG
CTTCGTCATTTCCCGGATTATCTCCCGTCCCCTGGTTGAGATGGCCGATTTCGCCACCAGTGTCACCAGCCAGGAGCAGT
ATCGGCACATTTCGATCAAATCAGGGGACGAAATCGGCGCCCTGGCAGGCGCCCTGAACAGCATGGGCGATCGCATCACG
TCCCAGATACAGGAACTGGAATCGGAAAAAAGCCGACTGGACACCATCCTGAGGGGAATGGGCGAAGGGGTCATGGTGGT
GCTGACCAACGGCACGATTACCCTGGTCAATCCCCCCTTCCAGAGCCTCTTCTCCTTCAGGGGGGATGAGGAGGGAAAGA
ATATCCGCGAGACCCTGAATATTCCGGAGATGATCGCCACCTTTGACGAGGTGCGGGAACAGGGAAAAGAGCTGGTCAGA
GAATTCCAGATTCAGGATGCCGGCACCACCCTGCTGACCCACTGGGTTCCCCTGAAGGTCAATGAGGGGGACGAAGGGGT
CGTCGTAGTCTTCCATGACATAACCGAGCGCAAGCATTACGAGGAAGCCCTGGCCAGGTCCGAAGATCGATTCCGCAGCG
TCGTGGAATGTTCCCTGACCGGGATGCATTTCATCTCTCTCGAAGCAGACGGCCGTCTGCTACTGACCGGAGCAAACCCA
GCGGCGGACAGCATCCTGGGGATCTCCCATTGGCCCCTTGTGGGCAGTGACGTGGAAGAAGCTTTCCCCGAGTTGAAAGA
CCATTTTCTGCTGGACCTCTACCGCAGGGTAGCCGCCGGCGAGCTCGGGCCCCAGTCCCTCGAACATGAACGGAGACTTG
AGAGCAAAACCAAACATTATGACCTACGCGTCTTCCGCACCGGTCCCGGCACCATATCCGTGGAATTCGCCGATATCACC
GAACGCACGCGTATGCAGGAGGAGCTCCGCGAGGCTTCGGAGCGGGACCCGCTGACCTCACTGTACAACAGGAGAAAGTT
GTATCAGCTACTGACAGTGGAGTTGACGAGAACCAGGCGGCACGGTCATCCCCTGACCCTGATGCTGCTGGATATCGATC
ACTTCAAGAGGATCAACGACACCTTCGGCCACGACAGCGGCGATCTGGTTCTGACACAGGTGGCGGAGCTGATCTCGGCC
ATACTCAGGTCGACGGATATCCTCGCCCGCTACGGCGGCGAGGAATTTGTGATCGCCTGTCCGGAGACAGACATGGATGG
CGCTGCGGTGCTTGCGGAGAAGATTCGCTCTTCCATCGCGATGTTCAGCTTCCCAACGGTTGGAGCGGTTACGATTAGTG
TTGGGATTTCACTGTTGGAGAGCAAAGACGACATCAACGCGCTGATCAAGCGCGCCGACACAGCACTCTATGCGGCCAAA
GAGATGGGCAGGAACAGGGTGGTGCGGTCAACAGAGGACGGCTGCCCGAATCCTTCTTCTGACGCATGCAATCCGTAA

Upstream 100 bases:

>100_bases
GCGAAAATCAGCCTGTAATAACCGCAGTCATCGCTGAAAGGGCTGAATTAACCAGGTTGCCGGTGGGAAGACGAACACAT
ACGGAACTTTTTTAATCGGC

Downstream 100 bases:

>100_bases
CGAGACAGAATTACATCGTCCGGTGTTAGCCGCCCCCAGCTCCACAACTTCGTTTCGCTCCTCTTCGGCCAACAAATGCC
CCCTGAACCACGTCACAAGG

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 504

Protein sequence:

>505_residues
MATKEGAPEVKPDRLLVLTMLMALVLSFVISRIISRPLVEMADFATSVTSQEQYRHISIKSGDEIGALAGALNSMGDRIT
SQIQELESEKSRLDTILRGMGEGVMVVLTNGTITLVNPPFQSLFSFRGDEEGKNIRETLNIPEMIATFDEVREQGKELVR
EFQIQDAGTTLLTHWVPLKVNEGDEGVVVVFHDITERKHYEEALARSEDRFRSVVECSLTGMHFISLEADGRLLLTGANP
AADSILGISHWPLVGSDVEEAFPELKDHFLLDLYRRVAAGELGPQSLEHERRLESKTKHYDLRVFRTGPGTISVEFADIT
ERTRMQEELREASERDPLTSLYNRRKLYQLLTVELTRTRRHGHPLTLMLLDIDHFKRINDTFGHDSGDLVLTQVAELISA
ILRSTDILARYGGEEFVIACPETDMDGAAVLAEKIRSSIAMFSFPTVGAVTISVGISLLESKDDINALIKRADTALYAAK
EMGRNRVVRSTEDGCPNPSSDACNP

Sequences:

>Translated_505_residues
MATKEGAPEVKPDRLLVLTMLMALVLSFVISRIISRPLVEMADFATSVTSQEQYRHISIKSGDEIGALAGALNSMGDRIT
SQIQELESEKSRLDTILRGMGEGVMVVLTNGTITLVNPPFQSLFSFRGDEEGKNIRETLNIPEMIATFDEVREQGKELVR
EFQIQDAGTTLLTHWVPLKVNEGDEGVVVVFHDITERKHYEEALARSEDRFRSVVECSLTGMHFISLEADGRLLLTGANP
AADSILGISHWPLVGSDVEEAFPELKDHFLLDLYRRVAAGELGPQSLEHERRLESKTKHYDLRVFRTGPGTISVEFADIT
ERTRMQEELREASERDPLTSLYNRRKLYQLLTVELTRTRRHGHPLTLMLLDIDHFKRINDTFGHDSGDLVLTQVAELISA
ILRSTDILARYGGEEFVIACPETDMDGAAVLAEKIRSSIAMFSFPTVGAVTISVGISLLESKDDINALIKRADTALYAAK
EMGRNRVVRSTEDGCPNPSSDACNP
>Mature_504_residues
ATKEGAPEVKPDRLLVLTMLMALVLSFVISRIISRPLVEMADFATSVTSQEQYRHISIKSGDEIGALAGALNSMGDRITS
QIQELESEKSRLDTILRGMGEGVMVVLTNGTITLVNPPFQSLFSFRGDEEGKNIRETLNIPEMIATFDEVREQGKELVRE
FQIQDAGTTLLTHWVPLKVNEGDEGVVVVFHDITERKHYEEALARSEDRFRSVVECSLTGMHFISLEADGRLLLTGANPA
ADSILGISHWPLVGSDVEEAFPELKDHFLLDLYRRVAAGELGPQSLEHERRLESKTKHYDLRVFRTGPGTISVEFADITE
RTRMQEELREASERDPLTSLYNRRKLYQLLTVELTRTRRHGHPLTLMLLDIDHFKRINDTFGHDSGDLVLTQVAELISAI
LRSTDILARYGGEEFVIACPETDMDGAAVLAEKIRSSIAMFSFPTVGAVTISVGISLLESKDDINALIKRADTALYAAKE
MGRNRVVRSTEDGCPNPSSDACNP

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=41.5204678362573, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=38.6363636363636, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=39.1025641025641, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=35.7954545454545, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=38.953488372093, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1787802, Length=186, Percent_Identity=38.7096774193548, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1788381, Length=311, Percent_Identity=28.2958199356913, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=35.4651162790698, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081977, Length=176, Percent_Identity=30.1136363636364, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=35.2941176470588, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=33.7209302325581, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=30.6748466257669, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 56213; Mature: 56082

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKEGAPEVKPDRLLVLTMLMALVLSFVISRIISRPLVEMADFATSVTSQEQYRHISIK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEC
SGDEIGALAGALNSMGDRITSQIQELESEKSRLDTILRGMGEGVMVVLTNGTITLVNPPF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCH
QSLFSFRGDEEGKNIRETLNIPEMIATFDEVREQGKELVREFQIQDAGTTLLTHWVPLKV
HHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
NEGDEGVVVVFHDITERKHYEEALARSEDRFRSVVECSLTGMHFISLEADGRLLLTGANP
CCCCCCEEEEEECHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCC
AADSILGISHWPLVGSDVEEAFPELKDHFLLDLYRRVAAGELGPQSLEHERRLESKTKHY
CHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCE
DLRVFRTGPGTISVEFADITERTRMQEELREASERDPLTSLYNRRKLYQLLTVELTRTRR
EEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
HGHPLTLMLLDIDHFKRINDTFGHDSGDLVLTQVAELISAILRSTDILARYGGEEFVIAC
CCCCEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
PETDMDGAAVLAEKIRSSIAMFSFPTVGAVTISVGISLLESKDDINALIKRADTALYAAK
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EMGRNRVVRSTEDGCPNPSSDACNP
HHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATKEGAPEVKPDRLLVLTMLMALVLSFVISRIISRPLVEMADFATSVTSQEQYRHISIK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEEEC
SGDEIGALAGALNSMGDRITSQIQELESEKSRLDTILRGMGEGVMVVLTNGTITLVNPPF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCH
QSLFSFRGDEEGKNIRETLNIPEMIATFDEVREQGKELVREFQIQDAGTTLLTHWVPLKV
HHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEE
NEGDEGVVVVFHDITERKHYEEALARSEDRFRSVVECSLTGMHFISLEADGRLLLTGANP
CCCCCCEEEEEECHHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCC
AADSILGISHWPLVGSDVEEAFPELKDHFLLDLYRRVAAGELGPQSLEHERRLESKTKHY
CHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCE
DLRVFRTGPGTISVEFADITERTRMQEELREASERDPLTSLYNRRKLYQLLTVELTRTRR
EEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
HGHPLTLMLLDIDHFKRINDTFGHDSGDLVLTQVAELISAILRSTDILARYGGEEFVIAC
CCCCEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
PETDMDGAAVLAEKIRSSIAMFSFPTVGAVTISVGISLLESKDDINALIKRADTALYAAK
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EMGRNRVVRSTEDGCPNPSSDACNP
HHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]