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The map label for this gene is algU [H]

Identifier: 118581074

GI number: 118581074

Start: 2898825

End: 2899394

Strand: Direct

Name: algU [H]

Synonym: Ppro_2663

Alternate gene names: 118581074

Gene position: 2898825-2899394 (Clockwise)

Preceding gene: 118581073

Following gene: 118581075

Centisome position: 72.33

GC content: 57.19

Gene sequence:

>570_bases
ATGGGGAACGTGGAGCACGAGATATCCGACGAAAGCATAATCAAGGCCGTACGCGCCGGAGATGACACGGCTTTTGCCCA
ACTGGTCGGCAGGCACAAGCGGCGGGTCTTCAGACTCGCCGCACGCTTTGCCAGAGACAGCGACGAGCAGGAGGACATCT
GCCAAACTGTGTTCCTCAAGGTTTACGAACACCTGCCATCCTTCCGAAATGACGCCCCTTTCGAGCACTGGTTGACCCGG
ATTACCGTGCGCTGTTGCCACGACGCACTTCGCGGCAGACGGCATGAAAAAATCACCCTGCGCCTGGATGACCAGGTATA
TGATATTCGCGACAATGCCGAAAAGGCCCGCCATGAGGCGCGCCAGGCTCGCAACTTTCTCCGCTTCGCCCTTTCTCGAC
TTACGGCGGATGAACGACTCGTAATCACCCTACTGGAGTTGGAGGAATTTTCCGTACGGGAGATAGCAACGGCCACCGGT
TGGAGCGAATCAAACGTTAAGGTAAGGGCGCACCGCGCTCGGCAGGCATTGAAACGGATAGTGGAGGAGCATGATGACCA
GCAGGCTTGA

Upstream 100 bases:

>100_bases
TTCAAGGAGATTCAGGCAAAACGCGACAGCAGGATGGATGACATGGGGAACTATGGGGCACGACACCACGGTCAGCACAG
GCAGCACAGATAGCATCGGT

Downstream 100 bases:

>100_bases
CGAACGACTCGCGCGACTCTTTGAGGCAGCCCGAGCCGAGGAGGTCGACACAAGCGCAGGGGAGGAGCATTTCGAAACCC
GTCTCCTGGCACGCATCAGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MGNVEHEISDESIIKAVRAGDDTAFAQLVGRHKRRVFRLAARFARDSDEQEDICQTVFLKVYEHLPSFRNDAPFEHWLTR
ITVRCCHDALRGRRHEKITLRLDDQVYDIRDNAEKARHEARQARNFLRFALSRLTADERLVITLLELEEFSVREIATATG
WSESNVKVRAHRARQALKRIVEEHDDQQA

Sequences:

>Translated_189_residues
MGNVEHEISDESIIKAVRAGDDTAFAQLVGRHKRRVFRLAARFARDSDEQEDICQTVFLKVYEHLPSFRNDAPFEHWLTR
ITVRCCHDALRGRRHEKITLRLDDQVYDIRDNAEKARHEARQARNFLRFALSRLTADERLVITLLELEEFSVREIATATG
WSESNVKVRAHRARQALKRIVEEHDDQQA
>Mature_188_residues
GNVEHEISDESIIKAVRAGDDTAFAQLVGRHKRRVFRLAARFARDSDEQEDICQTVFLKVYEHLPSFRNDAPFEHWLTRI
TVRCCHDALRGRRHEKITLRLDDQVYDIRDNAEKARHEARQARNFLRFALSRLTADERLVITLLELEEFSVREIATATGW
SESNVKVRAHRARQALKRIVEEHDDQQA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=190, Percent_Identity=29.4736842105263, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22130; Mature: 21999

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNVEHEISDESIIKAVRAGDDTAFAQLVGRHKRRVFRLAARFARDSDEQEDICQTVFLK
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VYEHLPSFRNDAPFEHWLTRITVRCCHDALRGRRHEKITLRLDDQVYDIRDNAEKARHEA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
RQARNFLRFALSRLTADERLVITLLELEEFSVREIATATGWSESNVKVRAHRARQALKRI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VEEHDDQQA
HHHCCCCCC
>Mature Secondary Structure 
GNVEHEISDESIIKAVRAGDDTAFAQLVGRHKRRVFRLAARFARDSDEQEDICQTVFLK
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
VYEHLPSFRNDAPFEHWLTRITVRCCHDALRGRRHEKITLRLDDQVYDIRDNAEKARHEA
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHH
RQARNFLRFALSRLTADERLVITLLELEEFSVREIATATGWSESNVKVRAHRARQALKRI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VEEHDDQQA
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]