Click here to switch to the map view.

The map label for this gene is sdhB [H]

Identifier: 118580894

GI number: 118580894

Start: 2687387

End: 2688145

Strand: Reverse

Name: sdhB [H]

Synonym: Ppro_2481

Alternate gene names: 118580894

Gene position: 2688145-2687387 (Counterclockwise)

Preceding gene: 118580895

Following gene: 118580893

Centisome position: 67.07

GC content: 58.76

Gene sequence:

>759_bases
ATGAGCGATCACAAGACAATGACACTGACACTGATCGTGTGGCGCCAAAAGGATGCCAGCGATCCGGGAAAGTTTGAGAC
CTATACCGCTAAGAACATCACTGAACATCATTCTTTTCTGGAGATGCTCGACGTTGTTAACGAAGATCTGATCCTTGCCG
GCAAGGAGCCGATCGCGTTTGACCACGACTGCCGCGAAGGCATCTGTGGCATGTGTTCCCAGATCATCAACGGCGCAGCC
CACGGCGGCCAGGAGCGGACCACGGTTTGCCAGCTGCACATGCGTAAGTTCAAGGATGGCGACACCATCTACATCGAGCC
CTGGCGTGCCCGCGCGTTCCCCATCATCAAGGACCTGGTGGTGGACCGCACCGCTCTGGATACCATTGTCCAGGCCGGCG
CCTACGTCTCCTGCCACACCGGCGGCGTGCCCGATGGCAATGCCATCCTGATTCCCAAGCCGATCGCTGACGAGTCCATG
GACGCCGCCGAATGTATCGGTTGCGGCGCCTGCGTGGCCGGTTGCCCCAACGGAGCTGCCATGCTCTTCACCGGTGCCAA
GGTTTCCCAGTTCGCGGTTCTTCCCCAGGGTAAGGGTGAGGCTGTGACACGCGTCAAGGCCCTGGTCAAAACCATGAAGG
AGTGCGGCTTTGGTAACTGCACCAACCATTATGAGTGCCAGGCTGCCTGCCCGAAGGGGATCAACGTCAAGTTTATCGCC
CGCATGAACCGCGAGTTCATCAAGGCACAGTTCGCCTGA

Upstream 100 bases:

>100_bases
TCGGCGCGTGGGAGTACAAGGGCGTTGGCAAAGAGCCCGAGCTGCACAAAGAGCCTTTGAAGTTTGATAATGTACATCTT
GCCATAAGGAGCTACAAGTA

Downstream 100 bases:

>100_bases
TCAATTCACGCATGTCTTTTGTTGAAAGGGGCAGCCATCCGGCTGCCCCTTTTTTTTAGTGGTGCGCTGTAACTGGAGTG
TTTAACGACAGGAAACCGGT

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSDHKTMTLTLIVWRQKDASDPGKFETYTAKNITEHHSFLEMLDVVNEDLILAGKEPIAFDHDCREGICGMCSQIINGAA
HGGQERTTVCQLHMRKFKDGDTIYIEPWRARAFPIIKDLVVDRTALDTIVQAGAYVSCHTGGVPDGNAILIPKPIADESM
DAAECIGCGACVAGCPNGAAMLFTGAKVSQFAVLPQGKGEAVTRVKALVKTMKECGFGNCTNHYECQAACPKGINVKFIA
RMNREFIKAQFA

Sequences:

>Translated_252_residues
MSDHKTMTLTLIVWRQKDASDPGKFETYTAKNITEHHSFLEMLDVVNEDLILAGKEPIAFDHDCREGICGMCSQIINGAA
HGGQERTTVCQLHMRKFKDGDTIYIEPWRARAFPIIKDLVVDRTALDTIVQAGAYVSCHTGGVPDGNAILIPKPIADESM
DAAECIGCGACVAGCPNGAAMLFTGAKVSQFAVLPQGKGEAVTRVKALVKTMKECGFGNCTNHYECQAACPKGINVKFIA
RMNREFIKAQFA
>Mature_251_residues
SDHKTMTLTLIVWRQKDASDPGKFETYTAKNITEHHSFLEMLDVVNEDLILAGKEPIAFDHDCREGICGMCSQIINGAAH
GGQERTTVCQLHMRKFKDGDTIYIEPWRARAFPIIKDLVVDRTALDTIVQAGAYVSCHTGGVPDGNAILIPKPIADESMD
AAECIGCGACVAGCPNGAAMLFTGAKVSQFAVLPQGKGEAVTRVKALVKTMKECGFGNCTNHYECQAACPKGINVKFIAR
MNREFIKAQFA

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 27387; Mature: 27256

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS00197 2FE2S_FER_1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHKTMTLTLIVWRQKDASDPGKFETYTAKNITEHHSFLEMLDVVNEDLILAGKEPIAF
CCCCCEEEEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
DHDCREGICGMCSQIINGAAHGGQERTTVCQLHMRKFKDGDTIYIEPWRARAFPIIKDLV
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
VDRTALDTIVQAGAYVSCHTGGVPDGNAILIPKPIADESMDAAECIGCGACVAGCPNGAA
HHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHCCCHHHHCCCCCCE
MLFTGAKVSQFAVLPQGKGEAVTRVKALVKTMKECGFGNCTNHYECQAACPKGINVKFIA
EEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEHH
RMNREFIKAQFA
HHCHHHHHHCCC
>Mature Secondary Structure 
SDHKTMTLTLIVWRQKDASDPGKFETYTAKNITEHHSFLEMLDVVNEDLILAGKEPIAF
CCCCEEEEEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
DHDCREGICGMCSQIINGAAHGGQERTTVCQLHMRKFKDGDTIYIEPWRARAFPIIKDLV
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
VDRTALDTIVQAGAYVSCHTGGVPDGNAILIPKPIADESMDAAECIGCGACVAGCPNGAA
HHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHCCCHHHHCCCCCCE
MLFTGAKVSQFAVLPQGKGEAVTRVKALVKTMKECGFGNCTNHYECQAACPKGINVKFIA
EEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEHH
RMNREFIKAQFA
HHCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]