| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
Click here to switch to the map view.
The map label for this gene is xseA [H]
Identifier: 118580820
GI number: 118580820
Start: 2603762
End: 2605189
Strand: Reverse
Name: xseA [H]
Synonym: Ppro_2406
Alternate gene names: 118580820
Gene position: 2605189-2603762 (Counterclockwise)
Preceding gene: 118580822
Following gene: 118580819
Centisome position: 65.0
GC content: 66.04
Gene sequence:
>1428_bases ATGGATCTCTTTTCCGAAAAGATTATTCTCACGGTCAGTCGGCTGACCTCCCTGCTGCGGGACGTGCTGGAGGAGAATTT CCAGCAGGTCTGGGTGCAGGGGGAAGTCTCCAACTTCTCCAGCCCCTCCTCGGGGCACTTCTACTTCTCCCTCAAGGACA GTGGCGCTCAGCTGCGCTGCGTGATGTTCAAGGGTGCGGCCCGCAACCTGAAATTCCGACCCGGCGACGGCATGGCGCTG ATCGCCCGGGGACGCATCTCGGTCTATGACCAGCGCGGCGACTACCAGTTGATCTGCGAGTACCTGGAGCCAGCCGGCGT GGGCGCCCTGCAGGCTGCCTTCCAGCAGCTGAAAGAACGCCTGGCCCGGGAAGGGCTCTTCGATCAGGCCCACAAGCGGC ATCTGCCGTTCTTCCCCCGCCGCCTGGGGGTGATCACCTCGGCCACCGGCGCGGCCATCCACGACATCCTCAACGTACTC AGGCGACGCTTCGCCTCCCTGGAGATCCTGCTCTACCCGGTGCGGGTGCAGGGGGAGGGGGCTGGACTGGAGATCGCCCG GGCCGTTGAGGAGATGAATCGCCTGCAGATGGCCGACGTACTGATCGTCGGCCGGGGGGGCGGCTCACTGGAAGACCTGT GGGCCTTCAACGAGGAGGTGCTGGCCCGGGCCCTGTACCGCTCCGCTATTCCGGTCATCTCAGCCGTTGGGCACGAGACC GACTGGACTATCGCTGACTTCGTGGCCGACCTGCGCGCCCCCACCCCCTCGGCAGCGGCTGAGCTGGTGGTGGCCAGCGC CGACGAGCTGCGCGGCAGAGTGGAAGGGCTGGAGCACCGCCTGGGGTTGGCCATGGAGTCCCGTCTCTCAACCCTGGAGT CGCGGGTGGCCTCCCTGCGGCGCCTGCTGGCCGACCCCAGCGCCACCCTGGGGCATCTGGCCCAGCGGGTGGACGACCTG ACCGAGCGGCTGGAGTTGGGCCTGCACAACGGCGTCATGCGGCTGAAGGAACGCTTCGACCGTCTCGATCGCCTGCTGAT GCAGCACTCCCCGCTCGCCAGGGTGGAACAGCTACGCCAGCGTCTGCTGCTCCTGGTGTCGCACGGCGAACGCTCCATGC TGTTGCGCCTGGAGGGGGATAAACAGGCGTTCGGTGCCGCTGCCGCCCGCCTGGAGGTGCTTTCCCCCCTGGCTACCCTG TCGCGCGGCTACTCCATCACCAGCCGCCAGCAGGACGGCAGGGTGATCAGCGACGCCTCCCAGCTCAAGATGGGGGAACT TTTGGACGTCAGGCTGCGCCATGGCGCGGCCCACTGCCGGGTGGAGGGGGTGCAACTGCCGACCGAGCCCAAACCCTTGA CGCATGCCGACGATTCTGAAATACTGTCCGATCAATCAAGGAACGACCATGGCAACGGAAAAATTTGA
Upstream 100 bases:
>100_bases GCCCGTTGCCGCTGGAAATCAACCGATAGTAGTTCAATTCGACGCCGACGGTCAACCGGTTTGACACTTTTTCAGCCACT GTGCTAGGGTGCGGCCAACC
Downstream 100 bases:
>100_bases AACAGCCCTGAAAAAACTGGAGGAAATCGTGCGCCGCCTGGAAGGAGGCTCGCTCTCCCTGGACGAATCCCTCAAAGCCT TCGAAGAGGGGGTCAGGCAC
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 475; Mature: 475
Protein sequence:
>475_residues MDLFSEKIILTVSRLTSLLRDVLEENFQQVWVQGEVSNFSSPSSGHFYFSLKDSGAQLRCVMFKGAARNLKFRPGDGMAL IARGRISVYDQRGDYQLICEYLEPAGVGALQAAFQQLKERLAREGLFDQAHKRHLPFFPRRLGVITSATGAAIHDILNVL RRRFASLEILLYPVRVQGEGAGLEIARAVEEMNRLQMADVLIVGRGGGSLEDLWAFNEEVLARALYRSAIPVISAVGHET DWTIADFVADLRAPTPSAAAELVVASADELRGRVEGLEHRLGLAMESRLSTLESRVASLRRLLADPSATLGHLAQRVDDL TERLELGLHNGVMRLKERFDRLDRLLMQHSPLARVEQLRQRLLLLVSHGERSMLLRLEGDKQAFGAAAARLEVLSPLATL SRGYSITSRQQDGRVISDASQLKMGELLDVRLRHGAAHCRVEGVQLPTEPKPLTHADDSEILSDQSRNDHGNGKI
Sequences:
>Translated_475_residues MDLFSEKIILTVSRLTSLLRDVLEENFQQVWVQGEVSNFSSPSSGHFYFSLKDSGAQLRCVMFKGAARNLKFRPGDGMAL IARGRISVYDQRGDYQLICEYLEPAGVGALQAAFQQLKERLAREGLFDQAHKRHLPFFPRRLGVITSATGAAIHDILNVL RRRFASLEILLYPVRVQGEGAGLEIARAVEEMNRLQMADVLIVGRGGGSLEDLWAFNEEVLARALYRSAIPVISAVGHET DWTIADFVADLRAPTPSAAAELVVASADELRGRVEGLEHRLGLAMESRLSTLESRVASLRRLLADPSATLGHLAQRVDDL TERLELGLHNGVMRLKERFDRLDRLLMQHSPLARVEQLRQRLLLLVSHGERSMLLRLEGDKQAFGAAAARLEVLSPLATL SRGYSITSRQQDGRVISDASQLKMGELLDVRLRHGAAHCRVEGVQLPTEPKPLTHADDSEILSDQSRNDHGNGKI >Mature_475_residues MDLFSEKIILTVSRLTSLLRDVLEENFQQVWVQGEVSNFSSPSSGHFYFSLKDSGAQLRCVMFKGAARNLKFRPGDGMAL IARGRISVYDQRGDYQLICEYLEPAGVGALQAAFQQLKERLAREGLFDQAHKRHLPFFPRRLGVITSATGAAIHDILNVL RRRFASLEILLYPVRVQGEGAGLEIARAVEEMNRLQMADVLIVGRGGGSLEDLWAFNEEVLARALYRSAIPVISAVGHET DWTIADFVADLRAPTPSAAAELVVASADELRGRVEGLEHRLGLAMESRLSTLESRVASLRRLLADPSATLGHLAQRVDDL TERLELGLHNGVMRLKERFDRLDRLLMQHSPLARVEQLRQRLLLLVSHGERSMLLRLEGDKQAFGAAAARLEVLSPLATL SRGYSITSRQQDGRVISDASQLKMGELLDVRLRHGAAHCRVEGVQLPTEPKPLTHADDSEILSDQSRNDHGNGKI
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=439, Percent_Identity=46.2414578587699, Blast_Score=388, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 52708; Mature: 52708
Theoretical pI: Translated: 7.48; Mature: 7.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLFSEKIILTVSRLTSLLRDVLEENFQQVWVQGEVSNFSSPSSGHFYFSLKDSGAQLRC CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCEEEEEEECCCCEEEE VMFKGAARNLKFRPGDGMALIARGRISVYDQRGDYQLICEYLEPAGVGALQAAFQQLKER EEEECCCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHH LAREGLFDQAHKRHLPFFPRRLGVITSATGAAIHDILNVLRRRFASLEILLYPVRVQGEG HHHCCHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCC AGLEIARAVEEMNRLQMADVLIVGRGGGSLEDLWAFNEEVLARALYRSAIPVISAVGHET CCHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC DWTIADFVADLRAPTPSAAAELVVASADELRGRVEGLEHRLGLAMESRLSTLESRVASLR CCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLLADPSATLGHLAQRVDDLTERLELGLHNGVMRLKERFDRLDRLLMQHSPLARVEQLRQ HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH RLLLLVSHGERSMLLRLEGDKQAFGAAAARLEVLSPLATLSRGYSITSRQQDGRVISDAS HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHH QLKMGELLDVRLRHGAAHCRVEGVQLPTEPKPLTHADDSEILSDQSRNDHGNGKI HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC >Mature Secondary Structure MDLFSEKIILTVSRLTSLLRDVLEENFQQVWVQGEVSNFSSPSSGHFYFSLKDSGAQLRC CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCEEEEEEECCCCEEEE VMFKGAARNLKFRPGDGMALIARGRISVYDQRGDYQLICEYLEPAGVGALQAAFQQLKER EEEECCCCCCCCCCCCCEEEEEECCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHH LAREGLFDQAHKRHLPFFPRRLGVITSATGAAIHDILNVLRRRFASLEILLYPVRVQGEG HHHCCHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEECCC AGLEIARAVEEMNRLQMADVLIVGRGGGSLEDLWAFNEEVLARALYRSAIPVISAVGHET CCHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC DWTIADFVADLRAPTPSAAAELVVASADELRGRVEGLEHRLGLAMESRLSTLESRVASLR CCHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLLADPSATLGHLAQRVDDLTERLELGLHNGVMRLKERFDRLDRLLMQHSPLARVEQLRQ HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH RLLLLVSHGERSMLLRLEGDKQAFGAAAARLEVLSPLATLSRGYSITSRQQDGRVISDAS HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHH QLKMGELLDVRLRHGAAHCRVEGVQLPTEPKPLTHADDSEILSDQSRNDHGNGKI HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA