Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 118580737

GI number: 118580737

Start: 2508491

End: 2509258

Strand: Direct

Name: rlpA [H]

Synonym: Ppro_2322

Alternate gene names: 118580737

Gene position: 2508491-2509258 (Clockwise)

Preceding gene: 118580733

Following gene: 118580748

Centisome position: 62.59

GC content: 68.23

Gene sequence:

>768_bases
ATGGATACACCACGTCATCCGCGTCTCCGCCTGGCGGGTGCGCTCACCTGCCTGCTGATTCCACTGCTGGCGGCCTGCGC
CGGCCGGCAGCGGACGGAGCAGGCGCCTTCGCCTCCCTACAAACGGGGGGAGCGTCCCTACAGCATAAACGGAATCCGCT
ACGAACCGCTGGCCAGCCACAAAGGCTTCCAGCAGGAAGGCACCGCCAGCAGCTACGGCGCCGACTTCCACGGCCGCGCC
ACCAGCAGCGGCGAACCGTTCGACATGAACGCCATGACCGCCGCCCACAAGACCCTGCCCCTGGGGGTCTATGTCAGGGT
GCGCCACAAACGCAGCAACAGGGAGGTGGAGGTCAGGATCAACGACCGCGGCCCCTTTGTGGGCGACCGCATCATCGACC
TCTCCGAGGCGGCGGCGGAGAAGCTGGGCATGCTGCGGGAGGGGCTTGCTCCGGTCAGGGTAACGGCGCTGGGCTACCGG
AGTCTCGACCGCAACGGCGCCCCGACCTATCGCGACCCGGAGAGCTACGACCGCGGCGACTTTACTCTTCAGGTGGGGGC
CTTCAGGAGCAGGGACAACGCGGACCGGCTGGCGCGGGAGCTGCGGCGGGACTTCAGCGAGGCGGATGTGCGGGAGGGGC
TGGTGTCCGGCACCAGGTTCTTTCGGGTGCGCGTGGGGCGGTACGCTTCGCTGAAAACAGCCCTGGCCAGCCAGCAGCAG
CACCGTGGCAGACGCTTCCCGGGTTGCTTCGTCGTTGCCCGGGACTGA

Upstream 100 bases:

>100_bases
GGCGGATGCAACCAGACCGCCGGGCCCGCGGGGATCATTGAACACCGTTTTCGCGCGAGGGCAGGTCACTGCCGGAAAAC
GGGGAAGGAGAACAGGAACC

Downstream 100 bases:

>100_bases
GCGCCACCCCCGCGCGGAAGCACGAAAAAAGAGGGGAGAGCCGGCCTGGCCCTCCCCTCCCACGAACAAAAGACTGCGGC
GCAAGCCCTAATGGGTGGTT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MDTPRHPRLRLAGALTCLLIPLLAACAGRQRTEQAPSPPYKRGERPYSINGIRYEPLASHKGFQQEGTASSYGADFHGRA
TSSGEPFDMNAMTAAHKTLPLGVYVRVRHKRSNREVEVRINDRGPFVGDRIIDLSEAAAEKLGMLREGLAPVRVTALGYR
SLDRNGAPTYRDPESYDRGDFTLQVGAFRSRDNADRLARELRRDFSEADVREGLVSGTRFFRVRVGRYASLKTALASQQQ
HRGRRFPGCFVVARD

Sequences:

>Translated_255_residues
MDTPRHPRLRLAGALTCLLIPLLAACAGRQRTEQAPSPPYKRGERPYSINGIRYEPLASHKGFQQEGTASSYGADFHGRA
TSSGEPFDMNAMTAAHKTLPLGVYVRVRHKRSNREVEVRINDRGPFVGDRIIDLSEAAAEKLGMLREGLAPVRVTALGYR
SLDRNGAPTYRDPESYDRGDFTLQVGAFRSRDNADRLARELRRDFSEADVREGLVSGTRFFRVRVGRYASLKTALASQQQ
HRGRRFPGCFVVARD
>Mature_255_residues
MDTPRHPRLRLAGALTCLLIPLLAACAGRQRTEQAPSPPYKRGERPYSINGIRYEPLASHKGFQQEGTASSYGADFHGRA
TSSGEPFDMNAMTAAHKTLPLGVYVRVRHKRSNREVEVRINDRGPFVGDRIIDLSEAAAEKLGMLREGLAPVRVTALGYR
SLDRNGAPTYRDPESYDRGDFTLQVGAFRSRDNADRLARELRRDFSEADVREGLVSGTRFFRVRVGRYASLKTALASQQQ
HRGRRFPGCFVVARD

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=149, Percent_Identity=37.5838926174497, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 28505; Mature: 28505

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTPRHPRLRLAGALTCLLIPLLAACAGRQRTEQAPSPPYKRGERPYSINGIRYEPLASH
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHCCCCCEEECCEEECCCCCC
KGFQQEGTASSYGADFHGRATSSGEPFDMNAMTAAHKTLPLGVYVRVRHKRSNREVEVRI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCEEEEEE
NDRGPFVGDRIIDLSEAAAEKLGMLREGLAPVRVTALGYRSLDRNGAPTYRDPESYDRGD
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCC
FTLQVGAFRSRDNADRLARELRRDFSEADVREGLVSGTRFFRVRVGRYASLKTALASQQQ
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH
HRGRRFPGCFVVARD
HCCCCCCCEEEEECC
>Mature Secondary Structure
MDTPRHPRLRLAGALTCLLIPLLAACAGRQRTEQAPSPPYKRGERPYSINGIRYEPLASH
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHCCCCCEEECCEEECCCCCC
KGFQQEGTASSYGADFHGRATSSGEPFDMNAMTAAHKTLPLGVYVRVRHKRSNREVEVRI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCEEEEEE
NDRGPFVGDRIIDLSEAAAEKLGMLREGLAPVRVTALGYRSLDRNGAPTYRDPESYDRGD
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCC
FTLQVGAFRSRDNADRLARELRRDFSEADVREGLVSGTRFFRVRVGRYASLKTALASQQQ
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH
HRGRRFPGCFVVARD
HCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]