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The map label for this gene is csgD [C]

Identifier: 118580732

GI number: 118580732

Start: 2503806

End: 2504411

Strand: Direct

Name: csgD [C]

Synonym: Ppro_2317

Alternate gene names: 118580732

Gene position: 2503806-2504411 (Clockwise)

Preceding gene: 118580731

Following gene: 118580733

Centisome position: 62.47

GC content: 57.76

Gene sequence:

>606_bases
ATGAAGATAGCCATCCATATCGGCAGCACCCTGCTGGCCCAGGCCCTGCGGGAGCAGTTGCTTAAAGAGCGGGACGTAGC
GGAAGTCGCCTTGGTGCATCCCGATTCGGGAGGTGAAACAGGGGAACCTGATTTCATCATCTGCGACGCGCACACCATCA
GACAGCAACGCCCCGCCTCCCTCTGCGGGGCGAAAACCGTCCTCCTGGATTACGGTCTCAGCGAGGACACCATCTCTTCC
CTGCTCGTCACCAGCAAGGTGGACGGCATCATGACCACCGACGCCGACATCCCCCTGCTCATGAAGGCGTTCCATGCCAT
TGCCCAGGGGCAGATATGGATTGACAACTGCAAGATCAGGGCACTGGTCACCTTCGCCGAAAACAACCGGGATTGCGTCA
CGGAAGGGAACCTGAGCAACAAGGAGCGTGAAGTGGTGATCAGTGTTTCCCAAGGGTTGACCAACAGGGAAATCGCTGCC
CGGTTGTACATCAGCGAACAGACGGTCAAAACCCACATCAACAACATCTTCAAGAAAACGAATATGGCCCGCCGGACCCA
GCTGGTTCCCCTGGGAATCAAGCTGATGGCCGACCCGGTCTCCTGA

Upstream 100 bases:

>100_bases
TTATTAAAATTTGATGATAGTTTTTTATCAACGATAGCAACAGGCGGCGCAGGAGCGACGCTCAGCTGGCCTCTCGCCGT
CGCACACAAACAGGAAGTAC

Downstream 100 bases:

>100_bases
CCCGCACCACACACTGACGGCGCCTTCCGCCAGATCAGCGCCAACCGGGGCCCTTGACCCGGAATACCGTTCACACCCTT
TCTCCACCTTACGTCGTACC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Two Component LuxR Family Transcriptional Regulator; Transcriptional Regulator Luxr Family; Transcriptional Regulator LuxR Family; Nitrate/Nitrite Response Regulator Protein; Two Component Transcriptional Regulator LuxR Family

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKIAIHIGSTLLAQALREQLLKERDVAEVALVHPDSGGETGEPDFIICDAHTIRQQRPASLCGAKTVLLDYGLSEDTISS
LLVTSKVDGIMTTDADIPLLMKAFHAIAQGQIWIDNCKIRALVTFAENNRDCVTEGNLSNKEREVVISVSQGLTNREIAA
RLYISEQTVKTHINNIFKKTNMARRTQLVPLGIKLMADPVS

Sequences:

>Translated_201_residues
MKIAIHIGSTLLAQALREQLLKERDVAEVALVHPDSGGETGEPDFIICDAHTIRQQRPASLCGAKTVLLDYGLSEDTISS
LLVTSKVDGIMTTDADIPLLMKAFHAIAQGQIWIDNCKIRALVTFAENNRDCVTEGNLSNKEREVVISVSQGLTNREIAA
RLYISEQTVKTHINNIFKKTNMARRTQLVPLGIKLMADPVS
>Mature_201_residues
MKIAIHIGSTLLAQALREQLLKERDVAEVALVHPDSGGETGEPDFIICDAHTIRQQRPASLCGAKTVLLDYGLSEDTISS
LLVTSKVDGIMTTDADIPLLMKAFHAIAQGQIWIDNCKIRALVTFAENNRDCVTEGNLSNKEREVVISVSQGLTNREIAA
RLYISEQTVKTHINNIFKKTNMARRTQLVPLGIKLMADPVS

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787277, Length=105, Percent_Identity=32.3809523809524, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22078; Mature: 22078

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAIHIGSTLLAQALREQLLKERDVAEVALVHPDSGGETGEPDFIICDAHTIRQQRPAS
CEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCHHHHHCCCHH
LCGAKTVLLDYGLSEDTISSLLVTSKVDGIMTTDADIPLLMKAFHAIAQGQIWIDNCKIR
HHCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCEEEECCEEE
ALVTFAENNRDCVTEGNLSNKEREVVISVSQGLTNREIAARLYISEQTVKTHINNIFKKT
EEEEEECCCCCEEECCCCCCCCEEEEEEECCCCCCHHEEEEEEECHHHHHHHHHHHHHHC
NMARRTQLVPLGIKLMADPVS
CHHHHHEEEEECEEEEECCCC
>Mature Secondary Structure
MKIAIHIGSTLLAQALREQLLKERDVAEVALVHPDSGGETGEPDFIICDAHTIRQQRPAS
CEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCHHHHHCCCHH
LCGAKTVLLDYGLSEDTISSLLVTSKVDGIMTTDADIPLLMKAFHAIAQGQIWIDNCKIR
HHCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCEEEECCEEE
ALVTFAENNRDCVTEGNLSNKEREVVISVSQGLTNREIAARLYISEQTVKTHINNIFKKT
EEEEEECCCCCEEECCCCCCCCEEEEEEECCCCCCHHEEEEEEECHHHHHHHHHHHHHHC
NMARRTQLVPLGIKLMADPVS
CHHHHHEEEEECEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA