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The map label for this gene is nodJ [H]

Identifier: 118580472

GI number: 118580472

Start: 2204210

End: 2204965

Strand: Reverse

Name: nodJ [H]

Synonym: Ppro_2056

Alternate gene names: 118580472

Gene position: 2204965-2204210 (Counterclockwise)

Preceding gene: 118580473

Following gene: 118580469

Centisome position: 55.01

GC content: 62.04

Gene sequence:

>756_bases
ATGCCGCGGGGATATCTGGCAATCTGGCGGCGGGACATGCTGGTGCTCAGGCGCAGTATCTGGTCGGAACTGGTGGCGAT
TGTTGCCTACCCACTGACCATGTACCTGGCCTTTGGCATCGGCATGAAGGGGTACATCGGACTGGTGGAGGGGGTGCCCT
ACAGCCTGTTCATAGCGCCGGGGCTCATCACCATGACCGCTGTCAACGCCGCTTACAACGAAAGCGTCTGGAGCCTCTGG
TTCCACCGGAGGGTGCAGTTCACGGTGGAGTCCTACCGGGTCACTCCCATCGGCGTCTGGGAAATCGTGGTGGCCAAGAT
CCTCTCCGGCTTCAGCCATGGCCTGATTAAGGGGCTGGCTGTGGCCCTGGTCATCTTCGCCATCACACCCTTCCGTTTCG
ATCCTGCCAACCTGCTGGCCTATCTGGCCTTCCTGCTCCCCGGTTCGGCGCTCTTTTCCTGCGCCGGGGTGATCAGCGGG
ACCGTCATGGACAAGCCGGAGACCATCGGCAAGGTGGAGGCGGTGCTGGTCATGCCGCTGATCTTCATGTCCGGCCTGTT
CTTTCCGCTCTCCTCCTATCCCGAACGGCTGATTCCCTGGGTGCGGTTGTTTCCCACCACCGCCCTGTTCGAGGGCGCTC
GTCATGCCCTGGTCGGCGGCGATTTCTCAACCGTTTTCGCGCTGCAGGTGCTTGCCGCGGCTCTGATCGCCTTTGTCGCG
GCGGTGGTGATCTTCAGGAACAGGATGGCGGAGTAG

Upstream 100 bases:

>100_bases
TCTCGGCCCTGCGCGGCGCGGCGGTGCGGCGCATCTCGCTTAAGGAGCGGACCCTGGAAGACGTGTTCATCAGCCTGACC
GGTGCGGGGGTGCGCAATTG

Downstream 100 bases:

>100_bases
GTGTGACTGAGGGGTGAGGGCTGTGCGAGGTTTCGAACGTATCGGCGGATCAGTTATCCCGTGCTTCCCACGCAAGCGGT
ATCGCGTCAAACAGCCTGTC

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MPRGYLAIWRRDMLVLRRSIWSELVAIVAYPLTMYLAFGIGMKGYIGLVEGVPYSLFIAPGLITMTAVNAAYNESVWSLW
FHRRVQFTVESYRVTPIGVWEIVVAKILSGFSHGLIKGLAVALVIFAITPFRFDPANLLAYLAFLLPGSALFSCAGVISG
TVMDKPETIGKVEAVLVMPLIFMSGLFFPLSSYPERLIPWVRLFPTTALFEGARHALVGGDFSTVFALQVLAAALIAFVA
AVVIFRNRMAE

Sequences:

>Translated_251_residues
MPRGYLAIWRRDMLVLRRSIWSELVAIVAYPLTMYLAFGIGMKGYIGLVEGVPYSLFIAPGLITMTAVNAAYNESVWSLW
FHRRVQFTVESYRVTPIGVWEIVVAKILSGFSHGLIKGLAVALVIFAITPFRFDPANLLAYLAFLLPGSALFSCAGVISG
TVMDKPETIGKVEAVLVMPLIFMSGLFFPLSSYPERLIPWVRLFPTTALFEGARHALVGGDFSTVFALQVLAAALIAFVA
AVVIFRNRMAE
>Mature_250_residues
PRGYLAIWRRDMLVLRRSIWSELVAIVAYPLTMYLAFGIGMKGYIGLVEGVPYSLFIAPGLITMTAVNAAYNESVWSLWF
HRRVQFTVESYRVTPIGVWEIVVAKILSGFSHGLIKGLAVALVIFAITPFRFDPANLLAYLAFLLPGSALFSCAGVISGT
VMDKPETIGKVEAVLVMPLIFMSGLFFPLSSYPERLIPWVRLFPTTALFEGARHALVGGDFSTVFALQVLAAALIAFVAA
VVIFRNRMAE

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=234, Percent_Identity=27.3504273504274, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 27645; Mature: 27514

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRGYLAIWRRDMLVLRRSIWSELVAIVAYPLTMYLAFGIGMKGYIGLVEGVPYSLFIAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHEEHHC
GLITMTAVNAAYNESVWSLWFHRRVQFTVESYRVTPIGVWEIVVAKILSGFSHGLIKGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
VALVIFAITPFRFDPANLLAYLAFLLPGSALFSCAGVISGTVMDKPETIGKVEAVLVMPL
HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
IFMSGLFFPLSSYPERLIPWVRLFPTTALFEGARHALVGGDFSTVFALQVLAAALIAFVA
HHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
AVVIFRNRMAE
HHHHHHHHCCC
>Mature Secondary Structure 
PRGYLAIWRRDMLVLRRSIWSELVAIVAYPLTMYLAFGIGMKGYIGLVEGVPYSLFIAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHEEHHC
GLITMTAVNAAYNESVWSLWFHRRVQFTVESYRVTPIGVWEIVVAKILSGFSHGLIKGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
VALVIFAITPFRFDPANLLAYLAFLLPGSALFSCAGVISGTVMDKPETIGKVEAVLVMPL
HHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
IFMSGLFFPLSSYPERLIPWVRLFPTTALFEGARHALVGGDFSTVFALQVLAAALIAFVA
HHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHH
AVVIFRNRMAE
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]