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The map label for this gene is nifU [H]

Identifier: 118580345

GI number: 118580345

Start: 2077933

End: 2078403

Strand: Reverse

Name: nifU [H]

Synonym: Ppro_1928

Alternate gene names: 118580345

Gene position: 2078403-2077933 (Counterclockwise)

Preceding gene: 118580346

Following gene: 118580341

Centisome position: 51.86

GC content: 59.87

Gene sequence:

>471_bases
ATGGGAGAAGAGACGTTTCTTGACCATGCGCGCAATCCGCGCAACGTCGGTCTGCTGGAAGATGCCAATGTGGTGATCCA
GGCCGGAGATCCGGAGTGCAGCGACAAGCTGATCTTCTTCGTCAGAATCGAGGAGGATCTGGTGCGGAATATCAAATTCC
TGATCGAGGGATGCGAGACGACCGTCGCCACCTCGTCGGCGCTTACCGGACTGGTGATGGGGCAGTCGCTGGATGTGGTA
CTCGCTCTTGATACCGAGGACATCGCCGCCGTGCTGGACGGTCTGCCCGTGGAAAAAATGCACTGCCCGACCATGGCCAT
ATCAGCCCTGCATGCCGCCGTGCGCCTCTACCGGGCAACGCCGCGGGGTGAGGCGTCGTCCGCCGATGAGGTGGTGGACA
CCTTTCGGGTCGTGAGCCAGATACTCAACCAACCGCTGTCCCAAGTCTATTCGTCGGAGTATGACCTGTAG

Upstream 100 bases:

>100_bases
CCGCAGAAGCCGGGCCCCAATGTAAGACTGACCCGGGACGGCGCCCTGAACGCCGGCCGGTATCTGATAACGAAAAACAG
CTTAAGGAGAGCAGCTAGAG

Downstream 100 bases:

>100_bases
GATTGATGTTCCTGGTCCACCGGTAAGGTAGTGTCGGGGTGCGCGGGTGACGGGAGCCTATCACATCTCTTTCTCTGCTC
CCTGTTAGTTTTCATTCCCA

Product: NifU domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MGEETFLDHARNPRNVGLLEDANVVIQAGDPECSDKLIFFVRIEEDLVRNIKFLIEGCETTVATSSALTGLVMGQSLDVV
LALDTEDIAAVLDGLPVEKMHCPTMAISALHAAVRLYRATPRGEASSADEVVDTFRVVSQILNQPLSQVYSSEYDL

Sequences:

>Translated_156_residues
MGEETFLDHARNPRNVGLLEDANVVIQAGDPECSDKLIFFVRIEEDLVRNIKFLIEGCETTVATSSALTGLVMGQSLDVV
LALDTEDIAAVLDGLPVEKMHCPTMAISALHAAVRLYRATPRGEASSADEVVDTFRVVSQILNQPLSQVYSSEYDL
>Mature_155_residues
GEETFLDHARNPRNVGLLEDANVVIQAGDPECSDKLIFFVRIEEDLVRNIKFLIEGCETTVATSSALTGLVMGQSLDVVL
ALDTEDIAAVLDGLPVEKMHCPTMAISALHAAVRLYRATPRGEASSADEVVDTFRVVSQILNQPLSQVYSSEYDL

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Escherichia coli, GI1788878, Length=120, Percent_Identity=34.1666666666667, Blast_Score=75, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17543474, Length=120, Percent_Identity=31.6666666666667, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324800, Length=117, Percent_Identity=39.3162393162393, Blast_Score=75, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6325122, Length=118, Percent_Identity=33.0508474576271, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355597, Length=119, Percent_Identity=35.2941176470588, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16994; Mature: 16863

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEETFLDHARNPRNVGLLEDANVVIQAGDPECSDKLIFFVRIEEDLVRNIKFLIEGCET
CCCCHHHHHCCCCCCCCEEECCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHH
TVATSSALTGLVMGQSLDVVLALDTEDIAAVLDGLPVEKMHCPTMAISALHAAVRLYRAT
HHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHCC
PRGEASSADEVVDTFRVVSQILNQPLSQVYSSEYDL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GEETFLDHARNPRNVGLLEDANVVIQAGDPECSDKLIFFVRIEEDLVRNIKFLIEGCET
CCCHHHHHCCCCCCCCEEECCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHH
TVATSSALTGLVMGQSLDVVLALDTEDIAAVLDGLPVEKMHCPTMAISALHAAVRLYRAT
HHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHCC
PRGEASSADEVVDTFRVVSQILNQPLSQVYSSEYDL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]