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The map label for this gene is ybhD [H]

Identifier: 118580342

GI number: 118580342

Start: 2074804

End: 2075694

Strand: Direct

Name: ybhD [H]

Synonym: Ppro_1925

Alternate gene names: 118580342

Gene position: 2074804-2075694 (Clockwise)

Preceding gene: 118580339

Following gene: 118580343

Centisome position: 51.77

GC content: 58.36

Gene sequence:

>891_bases
ATGACCATCGACCCACTTTCCCTTGCATTGTTCGTTGCCATTGTAGAGGAAGGCGCCATTGCCGCCGCTGCGGAGCGTGA
GCATATCGCGCCATCGGCGGTGAGCAAACGCATCAAGGAATTGGAGCAGCGCTTCAACACACCGCTCATCAGACGCACCA
ACCGGGGGGTCATTCCCACGGATGCCGGTATCACCCTGCTACATCTGTCGCGCGGCCTACTGCACGACCTGAACAATATC
CAGCTGCAGTTGAACGAATACTCCAGCGGTGTTCGTGGACACGTTCGCCTGAGTGCCAACATTTCCTCCATCAACCAGTT
CCTCCCCACGGAGCTAAAATCCTTCTCCGAACTGCATCCAGACATCCAGATTCACCTTGAGGAGAATGTCAGCGAAAACA
GTATGAAGGCGGTGATCACCAATGTCGCCGACCTGGGCATCATCACCATGGGCTCCTATCGCCCCAACCTTGAGTACTAT
CCCTACCACCACGATCAGTTGATCGTGGTCACTCCCCGGCAGCACCCTCTGGACGACAGAAAGAGGATCTCCTTCGCCGA
AACCCTGGATTTCGACTATGTGGGCCTCTCGGCCGGGAGCTCCCTGCACAGCCGCATACTCAGGGCAGCCAACGAGCTGA
ACAGGACCCCCAGGTTGCGCATCCAGGTCAATGGCTTCGACGCACTCTGCCTGATGGTCGAGGCAGGTCTGGGTATCGGC
ATCGTTCCCGAGGGGGCGGCAAAACCGTACTTCAAGGGGCTCCGTCTCCGTTCGCTCATCCTCGACGAACCCTGGGCCAA
ACGAGAACTCAAGCTGTGCGTGCGCTGCTTTGATTCCCTGCCCATTGCCGCGCAACTGCTGCTGCGTCACCTGCGGAACG
CATCGCCCTAG

Upstream 100 bases:

>100_bases
TATCCGGATACCGGTGGGCAGGGGGCGACTGTTTTCGCCCGGACACAACGCCCAGCCAGACAGGTATTTGTAAAACTAAA
CAGATAGCGAGATTCAGGCC

Downstream 100 bases:

>100_bases
CCTATCTGCCCTCTCCATACGCGATGGCAGCCTCGCCAATCGCCGCTTCCCCTGGCCATTGCTTTCGCGTATGGTTGACT
GCATCCCACATCCAAAGAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTIDPLSLALFVAIVEEGAIAAAAEREHIAPSAVSKRIKELEQRFNTPLIRRTNRGVIPTDAGITLLHLSRGLLHDLNNI
QLQLNEYSSGVRGHVRLSANISSINQFLPTELKSFSELHPDIQIHLEENVSENSMKAVITNVADLGIITMGSYRPNLEYY
PYHHDQLIVVTPRQHPLDDRKRISFAETLDFDYVGLSAGSSLHSRILRAANELNRTPRLRIQVNGFDALCLMVEAGLGIG
IVPEGAAKPYFKGLRLRSLILDEPWAKRELKLCVRCFDSLPIAAQLLLRHLRNASP

Sequences:

>Translated_296_residues
MTIDPLSLALFVAIVEEGAIAAAAEREHIAPSAVSKRIKELEQRFNTPLIRRTNRGVIPTDAGITLLHLSRGLLHDLNNI
QLQLNEYSSGVRGHVRLSANISSINQFLPTELKSFSELHPDIQIHLEENVSENSMKAVITNVADLGIITMGSYRPNLEYY
PYHHDQLIVVTPRQHPLDDRKRISFAETLDFDYVGLSAGSSLHSRILRAANELNRTPRLRIQVNGFDALCLMVEAGLGIG
IVPEGAAKPYFKGLRLRSLILDEPWAKRELKLCVRCFDSLPIAAQLLLRHLRNASP
>Mature_295_residues
TIDPLSLALFVAIVEEGAIAAAAEREHIAPSAVSKRIKELEQRFNTPLIRRTNRGVIPTDAGITLLHLSRGLLHDLNNIQ
LQLNEYSSGVRGHVRLSANISSINQFLPTELKSFSELHPDIQIHLEENVSENSMKAVITNVADLGIITMGSYRPNLEYYP
YHHDQLIVVTPRQHPLDDRKRISFAETLDFDYVGLSAGSSLHSRILRAANELNRTPRLRIQVNGFDALCLMVEAGLGIGI
VPEGAAKPYFKGLRLRSLILDEPWAKRELKLCVRCFDSLPIAAQLLLRHLRNASP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=271, Percent_Identity=26.9372693726937, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1787879, Length=258, Percent_Identity=26.3565891472868, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI157672245, Length=223, Percent_Identity=24.2152466367713, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787530, Length=233, Percent_Identity=25.3218884120172, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=27.4193548387097, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI2367136, Length=253, Percent_Identity=24.1106719367589, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=278, Percent_Identity=24.4604316546763, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788887, Length=279, Percent_Identity=24.3727598566308, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787589, Length=140, Percent_Identity=29.2857142857143, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=27.3356401384083, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786401, Length=140, Percent_Identity=30, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787601, Length=236, Percent_Identity=20.7627118644068, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786713, Length=283, Percent_Identity=25.7950530035336, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=218, Percent_Identity=24.3119266055046, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790399, Length=269, Percent_Identity=20.4460966542751, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33057; Mature: 32925

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDPLSLALFVAIVEEGAIAAAAEREHIAPSAVSKRIKELEQRFNTPLIRRTNRGVIPT
CCCCHHHHHHHHHHHHCCCCEEHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
DAGITLLHLSRGLLHDLNNIQLQLNEYSSGVRGHVRLSANISSINQFLPTELKSFSELHP
CCCEEHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
DIQIHLEENVSENSMKAVITNVADLGIITMGSYRPNLEYYPYHHDQLIVVTPRQHPLDDR
CEEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHH
KRISFAETLDFDYVGLSAGSSLHSRILRAANELNRTPRLRIQVNGFDALCLMVEAGLGIG
HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCE
IVPEGAAKPYFKGLRLRSLILDEPWAKRELKLCVRCFDSLPIAAQLLLRHLRNASP
ECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TIDPLSLALFVAIVEEGAIAAAAEREHIAPSAVSKRIKELEQRFNTPLIRRTNRGVIPT
CCCHHHHHHHHHHHHCCCCEEHHHHHCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
DAGITLLHLSRGLLHDLNNIQLQLNEYSSGVRGHVRLSANISSINQFLPTELKSFSELHP
CCCEEHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCC
DIQIHLEENVSENSMKAVITNVADLGIITMGSYRPNLEYYPYHHDQLIVVTPRQHPLDDR
CEEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCHH
KRISFAETLDFDYVGLSAGSSLHSRILRAANELNRTPRLRIQVNGFDALCLMVEAGLGIG
HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCE
IVPEGAAKPYFKGLRLRSLILDEPWAKRELKLCVRCFDSLPIAAQLLLRHLRNASP
ECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]