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The map label for this gene is ihfB [H]

Identifier: 118580308

GI number: 118580308

Start: 2040438

End: 2040710

Strand: Reverse

Name: ihfB [H]

Synonym: Ppro_1890

Alternate gene names: 118580308

Gene position: 2040710-2040438 (Counterclockwise)

Preceding gene: 118580312

Following gene: 118580298

Centisome position: 50.92

GC content: 46.15

Gene sequence:

>273_bases
ATGACAAGGTCAGAATTGGTAGAACAACTGTCAGTAAGGAAAGACATCTCAATTGGTACTGCGGAGAAAATTGTTCAGGA
AATCTTTGGTAGTATGACTGACACCCTGATTGCCGGTGACCGTATCGAAATACGCGGTTTCGGCAGTTTCGAAAACCGGG
ACTATGACGAGCGTACTGGTAGGAATCCCAAGTCGGGTATCGAGGTATCTGTTGCCGCCAAGAAACGCCCTTTCTTCAAG
GTAGGTAAGGATTTGAAGGAACGCATACTGTAA

Upstream 100 bases:

>100_bases
CAATGACCAGCGGCAAACTTCCATCAGCCGATGATATGGAGCGTCACCACCGAGCTATTGAATGGTCGAAACGGGTTATT
ACACTTGCGGAGAATGATAA

Downstream 100 bases:

>100_bases
GCCCCTTGCAAATGAATTTCCACTATCCTAGAAGTCCCAGGCAATCGGTGCGACCTTGCCGGTATTCTGTGAGTTGATTA
TTTCTGCCGGCATGCTGACT

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MTRSELVEQLSVRKDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERTGRNPKSGIEVSVAAKKRPFFK
VGKDLKERIL

Sequences:

>Translated_90_residues
MTRSELVEQLSVRKDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERTGRNPKSGIEVSVAAKKRPFFK
VGKDLKERIL
>Mature_89_residues
TRSELVEQLSVRKDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERTGRNPKSGIEVSVAAKKRPFFKV
GKDLKERIL

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=89, Percent_Identity=48.314606741573, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=38.2022471910112, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=32.5842696629214, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=32.5842696629214, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10177; Mature: 10046

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSELVEQLSVRKDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERTG
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHCC
RNPKSGIEVSVAAKKRPFFKVGKDLKERIL
CCCCCCCEEEEECCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TRSELVEQLSVRKDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERTG
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHCC
RNPKSGIEVSVAAKKRPFFKVGKDLKERIL
CCCCCCCEEEEECCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA