Click here to switch to the map view.

The map label for this gene is yrrC [H]

Identifier: 118580283

GI number: 118580283

Start: 2006218

End: 2008404

Strand: Reverse

Name: yrrC [H]

Synonym: Ppro_1864

Alternate gene names: 118580283

Gene position: 2008404-2006218 (Counterclockwise)

Preceding gene: 118580284

Following gene: 118580282

Centisome position: 50.11

GC content: 49.7

Gene sequence:

>2187_bases
ATGAAACAGCCCAATTCGCTTGATACCCCTGTCGAACGCCTCTCCGGTTCAGTTGAACGGGTCACCTTCCACAGTGAAGA
ATCCGGCTTCTGTGTGCTCCGTACCAAAGTCAAGGGACAGCGGGAACTGATTACCGTTATCGGTTCCGCTGCATCCATCA
CCCCCGGTGAATACATTGAGTGCATTGGTATCTGGACAAACGACCGAACCCACGGACTACAATTCAAAGCCAACCAGTTG
AAAGTCGTACCACCAAGCACACTTGAAGGAATTGAGAAATATCTCGGCTCAGGGATGGTCAAGGGAATTGGTCCTCACTT
CGCCAAGATTCTCGTCAAAGCTTTCAAAGAGGATGTCTTCACCGTAATCGAATCTGAACCAGAGAAGCTGCTTACTCTTC
CCGGTATCGGTCGAAAGCGCATGGAGAAGGTGACAAGTGCCTGGTCCGAACAGAAAGTCATTCGTGAAATCATGGTCTTC
CTTCAATCGCACGGAATCGGAACAGGACGAGCGGTCAGGATATACAAGACCTATGGCGACGAATCCATTCTCAAGGTAAC
TGAAAACCCTTACAGACTCGCACTGGATATTCACGGTATTGGTTTCAAGACCGCAGACACTCTTGCCATGAAGCTGGGGA
TCGCTGCTGATTCACTTATTCGCGCTCAAGCCGGTGTCCGTCATGTTCTTCAGGAAATTGCAGATGATGGACATTGTGCT
GCGCCATGGGTTGACTTGGTTAAATCTGCAGCCGAACTTTTGGAAATACCAGCAAGCATTATAGAAGAGGCCATTCATGC
TGAAATTGCAGAAGAGAACCTTATCCAGGAGGATATTGAAGGCTCAGCCTGTCTCTTCCTGATCCCTCTGTTTCGTGCTG
AATCCGGAACCGCTACAAGCATCACCCGGCTCCTACGGGGAACACCTCCCTGGGGAGTAATTGATGCAGAAAAGGCTATT
CCCTGGGTAGAAGCAAAGACCGGCCTGACACTATCCAGTTCCCAACGTGATGCCGTCATTTTAGCTCTCAACAGCAAAGT
CGTGGTTATTACCGGTGGTCCTGGTGTTGGCAAAACGACCCTGGTCAACAGCATACTGCTCACGATCCAGGCAAAGCAGA
TGAGGGTTACTCTCTGTGCACCGACCGGACGTGCTGCCAAAAGATTGTCGGAATCAACCGGTATTGAGGCAAAGACCATC
CACCGCTTGCTGGAGTTCGACCCGCAGTCATTCGGATTCAAGCGAAATAAAGATAATCCGCTGGAAACCGACCTGGTGGT
TATAGACGAATCTTCAATGGTTGATATAGCCTTGATGAATAAGCTTCTGGCTGCCGTTCCAACCAATGCAGCTCTGATGA
TTGTTGGAGACGTTGACCAACTCCCCTCTGTCGGTCCCGGCTCCGTGCTTTCGGATATCATTGATTCGGGAGTAGTGCCT
ACTGTGAGGCTTACGGAGATATTCCGTCAAGCAGCAAATTCACGCATCATCGTCAATGCCCACCGAATCAATAAGGGTGA
GATGCCTCTCAAAGCCGAAGGCACCGAACTATCGGACTTTTATTTCATTCCGACCAATACTCCGGAAGAAATCCATGACA
AACTCATTCAGGTTGTCACAGAGCGTATCCCCAAGAGATTTGGTCTTCATCCGGTGAAAGATATCCAGGTGCTTACCCCA
ACGAATCGTGGCGGTCTTGGTGCGCATTCATTGAATGCCGAGTTGCAGAAGGCGCTAAACGAAAAGGCGGAACCAAAAGT
CACACGATTCGGCACCACCTTTGCTCCCGACGACAAGGTCATCCAGACGGTGAACAACTACGATAAAGAGGTGTTCAACG
GTGACATCGGTCAGATTACTGAGATTGATGTCGAAGAAGGATTATTACAGGTTGATTATGATGGCAGAACTGTTGAATAC
GAGTTCGGCGAACTGGATGAGGTTTCTCTGGCCTATGCCACCAGCATCCATAAAAGCCAGGGATCGGAATACCCAGCGGT
GGTGATTCCTTTGGCCATGCAGCATTACACGCTGTTGGAGCGCAATCTGATATACACTGCCGTCACCAGGGGAAAGAAGC
TCGTGACGATCATCGGTCAACCAAAGGCGCTAGCAATGGCGGTCAAGAACCGGAAGTCGAATAAGCGACTGACTAAGCTG
GCTTCTAGAATATCAGAATCCGGGTAA

Upstream 100 bases:

>100_bases
GTCGTCAAGATTGGCCGCAACGACCCGTGCCCCTGCGGGAGCGGTATAAAGTACAAGAAATGTTGTGGAAAATGATTATT
CCCAATAAAGCTGTTACCCC

Downstream 100 bases:

>100_bases
AAGGATTTCGTAATGATAGACACATGGATAACTGATTTAACTCACTTTTTTGATGATGCTGGTGATCTTGTATCAGAACC
GGCACAGGCAAAAGCCCTCG

Product: RecD/TraA family helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 728; Mature: 728

Protein sequence:

>728_residues
MKQPNSLDTPVERLSGSVERVTFHSEESGFCVLRTKVKGQRELITVIGSAASITPGEYIECIGIWTNDRTHGLQFKANQL
KVVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFKEDVFTVIESEPEKLLTLPGIGRKRMEKVTSAWSEQKVIREIMVF
LQSHGIGTGRAVRIYKTYGDESILKVTENPYRLALDIHGIGFKTADTLAMKLGIAADSLIRAQAGVRHVLQEIADDGHCA
APWVDLVKSAAELLEIPASIIEEAIHAEIAEENLIQEDIEGSACLFLIPLFRAESGTATSITRLLRGTPPWGVIDAEKAI
PWVEAKTGLTLSSSQRDAVILALNSKVVVITGGPGVGKTTLVNSILLTIQAKQMRVTLCAPTGRAAKRLSESTGIEAKTI
HRLLEFDPQSFGFKRNKDNPLETDLVVIDESSMVDIALMNKLLAAVPTNAALMIVGDVDQLPSVGPGSVLSDIIDSGVVP
TVRLTEIFRQAANSRIIVNAHRINKGEMPLKAEGTELSDFYFIPTNTPEEIHDKLIQVVTERIPKRFGLHPVKDIQVLTP
TNRGGLGAHSLNAELQKALNEKAEPKVTRFGTTFAPDDKVIQTVNNYDKEVFNGDIGQITEIDVEEGLLQVDYDGRTVEY
EFGELDEVSLAYATSIHKSQGSEYPAVVIPLAMQHYTLLERNLIYTAVTRGKKLVTIIGQPKALAMAVKNRKSNKRLTKL
ASRISESG

Sequences:

>Translated_728_residues
MKQPNSLDTPVERLSGSVERVTFHSEESGFCVLRTKVKGQRELITVIGSAASITPGEYIECIGIWTNDRTHGLQFKANQL
KVVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFKEDVFTVIESEPEKLLTLPGIGRKRMEKVTSAWSEQKVIREIMVF
LQSHGIGTGRAVRIYKTYGDESILKVTENPYRLALDIHGIGFKTADTLAMKLGIAADSLIRAQAGVRHVLQEIADDGHCA
APWVDLVKSAAELLEIPASIIEEAIHAEIAEENLIQEDIEGSACLFLIPLFRAESGTATSITRLLRGTPPWGVIDAEKAI
PWVEAKTGLTLSSSQRDAVILALNSKVVVITGGPGVGKTTLVNSILLTIQAKQMRVTLCAPTGRAAKRLSESTGIEAKTI
HRLLEFDPQSFGFKRNKDNPLETDLVVIDESSMVDIALMNKLLAAVPTNAALMIVGDVDQLPSVGPGSVLSDIIDSGVVP
TVRLTEIFRQAANSRIIVNAHRINKGEMPLKAEGTELSDFYFIPTNTPEEIHDKLIQVVTERIPKRFGLHPVKDIQVLTP
TNRGGLGAHSLNAELQKALNEKAEPKVTRFGTTFAPDDKVIQTVNNYDKEVFNGDIGQITEIDVEEGLLQVDYDGRTVEY
EFGELDEVSLAYATSIHKSQGSEYPAVVIPLAMQHYTLLERNLIYTAVTRGKKLVTIIGQPKALAMAVKNRKSNKRLTKL
ASRISESG
>Mature_728_residues
MKQPNSLDTPVERLSGSVERVTFHSEESGFCVLRTKVKGQRELITVIGSAASITPGEYIECIGIWTNDRTHGLQFKANQL
KVVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFKEDVFTVIESEPEKLLTLPGIGRKRMEKVTSAWSEQKVIREIMVF
LQSHGIGTGRAVRIYKTYGDESILKVTENPYRLALDIHGIGFKTADTLAMKLGIAADSLIRAQAGVRHVLQEIADDGHCA
APWVDLVKSAAELLEIPASIIEEAIHAEIAEENLIQEDIEGSACLFLIPLFRAESGTATSITRLLRGTPPWGVIDAEKAI
PWVEAKTGLTLSSSQRDAVILALNSKVVVITGGPGVGKTTLVNSILLTIQAKQMRVTLCAPTGRAAKRLSESTGIEAKTI
HRLLEFDPQSFGFKRNKDNPLETDLVVIDESSMVDIALMNKLLAAVPTNAALMIVGDVDQLPSVGPGSVLSDIIDSGVVP
TVRLTEIFRQAANSRIIVNAHRINKGEMPLKAEGTELSDFYFIPTNTPEEIHDKLIQVVTERIPKRFGLHPVKDIQVLTP
TNRGGLGAHSLNAELQKALNEKAEPKVTRFGTTFAPDDKVIQTVNNYDKEVFNGDIGQITEIDVEEGLLQVDYDGRTVEY
EFGELDEVSLAYATSIHKSQGSEYPAVVIPLAMQHYTLLERNLIYTAVTRGKKLVTIIGQPKALAMAVKNRKSNKRLTKL
ASRISESG

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=460, Percent_Identity=28.0434782608696, Blast_Score=129, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 79523; Mature: 79523

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQPNSLDTPVERLSGSVERVTFHSEESGFCVLRTKVKGQRELITVIGSAASITPGEYIE
CCCCCCCCCHHHHHCCCEEEEEEECCCCCEEEEEECCCCCHHHHHEECCCCCCCCCCEEE
CIGIWTNDRTHGLQFKANQLKVVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFKEDVF
EEEEEECCCCCCEEEECCEEEEECCHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHH
TVIESEPEKLLTLPGIGRKRMEKVTSAWSEQKVIREIMVFLQSHGIGTGRAVRIYKTYGD
HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
ESILKVTENPYRLALDIHGIGFKTADTLAMKLGIAADSLIRAQAGVRHVLQEIADDGHCA
CEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC
APWVDLVKSAAELLEIPASIIEEAIHAEIAEENLIQEDIEGSACLFLIPLFRAESGTATS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHCCCCCHHH
ITRLLRGTPPWGVIDAEKAIPWVEAKTGLTLSSSQRDAVILALNSKVVVITGGPGVGKTT
HHHHHCCCCCCCEEEHHHCCCCEECCCCCEEECCCCCEEEEEECCEEEEEECCCCCCHHH
LVNSILLTIQAKQMRVTLCAPTGRAAKRLSESTGIEAKTIHRLLEFDPQSFGFKRNKDNP
HHHHHHEEEEECEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHCCCCCCCCCC
LETDLVVIDESSMVDIALMNKLLAAVPTNAALMIVGDVDQLPSVGPGSVLSDIIDSGVVP
CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCHHHHHHHHHCCCCC
TVRLTEIFRQAANSRIIVNAHRINKGEMPLKAEGTELSDFYFIPTNTPEEIHDKLIQVVT
HHHHHHHHHHHCCCEEEEEEEECCCCCCCEEECCCCCCCEEEECCCCHHHHHHHHHHHHH
ERIPKRFGLHPVKDIQVLTPTNRGGLGAHSLNAELQKALNEKAEPKVTRFGTTFAPDDKV
HHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHH
IQTVNNYDKEVFNGDIGQITEIDVEEGLLQVDYDGRTVEYEFGELDEVSLAYATSIHKSQ
HHHHHHHHHHHHCCCCCCEEEEEHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
GSEYPAVVIPLAMQHYTLLERNLIYTAVTRGKKLVTIIGQPKALAMAVKNRKSNKRLTKL
CCCCCEEEEEHHHHHHHHHHHCEEEEEECCCCEEEEEECCCHHHHHHHHCCCCHHHHHHH
ASRISESG
HHHHHCCC
>Mature Secondary Structure
MKQPNSLDTPVERLSGSVERVTFHSEESGFCVLRTKVKGQRELITVIGSAASITPGEYIE
CCCCCCCCCHHHHHCCCEEEEEEECCCCCEEEEEECCCCCHHHHHEECCCCCCCCCCEEE
CIGIWTNDRTHGLQFKANQLKVVPPSTLEGIEKYLGSGMVKGIGPHFAKILVKAFKEDVF
EEEEEECCCCCCEEEECCEEEEECCHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHH
TVIESEPEKLLTLPGIGRKRMEKVTSAWSEQKVIREIMVFLQSHGIGTGRAVRIYKTYGD
HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
ESILKVTENPYRLALDIHGIGFKTADTLAMKLGIAADSLIRAQAGVRHVLQEIADDGHCA
CEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC
APWVDLVKSAAELLEIPASIIEEAIHAEIAEENLIQEDIEGSACLFLIPLFRAESGTATS
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHCCCCCHHH
ITRLLRGTPPWGVIDAEKAIPWVEAKTGLTLSSSQRDAVILALNSKVVVITGGPGVGKTT
HHHHHCCCCCCCEEEHHHCCCCEECCCCCEEECCCCCEEEEEECCEEEEEECCCCCCHHH
LVNSILLTIQAKQMRVTLCAPTGRAAKRLSESTGIEAKTIHRLLEFDPQSFGFKRNKDNP
HHHHHHEEEEECEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHCCCCCCCCCC
LETDLVVIDESSMVDIALMNKLLAAVPTNAALMIVGDVDQLPSVGPGSVLSDIIDSGVVP
CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCHHHHHHHHHCCCCC
TVRLTEIFRQAANSRIIVNAHRINKGEMPLKAEGTELSDFYFIPTNTPEEIHDKLIQVVT
HHHHHHHHHHHCCCEEEEEEEECCCCCCCEEECCCCCCCEEEECCCCHHHHHHHHHHHHH
ERIPKRFGLHPVKDIQVLTPTNRGGLGAHSLNAELQKALNEKAEPKVTRFGTTFAPDDKV
HHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHH
IQTVNNYDKEVFNGDIGQITEIDVEEGLLQVDYDGRTVEYEFGELDEVSLAYATSIHKSQ
HHHHHHHHHHHHCCCCCCEEEEEHHCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHCC
GSEYPAVVIPLAMQHYTLLERNLIYTAVTRGKKLVTIIGQPKALAMAVKNRKSNKRLTKL
CCCCCEEEEEHHHHHHHHHHHCEEEEEECCCCEEEEEECCCHHHHHHHHCCCCHHHHHHH
ASRISESG
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]