Click here to switch to the map view.

The map label for this gene is yhgF [C]

Identifier: 118580106

GI number: 118580106

Start: 1811015

End: 1813186

Strand: Direct

Name: yhgF [C]

Synonym: Ppro_1685

Alternate gene names: 118580106

Gene position: 1811015-1813186 (Clockwise)

Preceding gene: 118580104

Following gene: 118580107

Centisome position: 45.19

GC content: 63.67

Gene sequence:

>2172_bases
ATGAAGCCGAATAATGAACAGCTTGCCAAGATCATTGAGTACATCATCGACGCCACCGGACTTGGACGCGGACAGGTGCA
GAACTGCGTGGAACTGCTCCAGGGTGGCGCCACCGTGCCGTTCATCGCCCGCTACCGCAAGGAGATGACCGGCGAACTGG
ACGAGGTGCGCATCCGTGACGTGGAGGAGCAGTACGTCTACTTCCGCGAACTGGGTGAGCGCAAGTTGACGGTGCTCAAT
TCCATCGAGGAGCAGGGCAAGCTTACGCCGGAGTTGCGTCAACGCATCGAGGCATCGTCTAAAAAGACCGAGGTGGAGGA
CCTCTACCTCCCCTTCAAGCCCAAACGCCGCACTAAGGCGATCATCGCCCGGGAGCGGGGACTGGAGCCGCTGGCGGACA
TCATGGCGGCCCAGGAACTCTTCTCGGGGAGTCCCGAGGAGGCGGCTGTCCCCTTTGTTAACCCGGAGCTGGAGATCCCC
GACGCGGCAGCGGCCCTGGAGGGGGCAGGCCATATCCTGGCCGAGCGGCTTTCCGATGATGCCGACAGTCGCGACATGGT
ACGGCGCCTGACCGCCGAGCAGGGGGTGATCGTCTCACGAGTGGCGGCGGATAAGAAGGGGCAGGTCACCAAATTCGAGA
TGTACTACGACTACCAGGAGTCGCTCAGGGAGGTTCCCTCCCACCGCATGCTGGCCATGCGGCGGGGCGAGAAGGAGGAG
GTGCTCTACCTCTCCATCGTCGCGCCCCAGGAGCATATCCTGGTCGGCCTCAAGTCACGGCTGATCAGGGGGGAGAGCGT
CTTCAGGCCGCTTCTGGAGCGGGTCGTAGAGGATGCCTACAAGCGGCTGATCGCCCCTTCCATCGAAGTGGAGTTGCGCC
TGGATTCCAAGGAGCGCGCCGACGAGGCGGCCATCGCGGTGTTTGCCCAGAATCTGCGCAACCTCCTGCTGGCGCCCCCG
GCCGGGGGTAAACGGGTGCTGGGCATCGACCCCGGCTTCCGCACCGGCTCCAAGCTGGCGGCCCTGGACGCTACCGGCCG
TTTCATGGAGCATGTCACGATCTACCCCCACACGGGAGAGGCGCGTATTCACCAGGCCCGACAGGAGCTGCTGCGCCTGG
TGGAGACCTTTGATATCGAGATGATCGCCGTGGGCAACGGCACCGCTGGCCGCGAGATGGAAATATTCAGCCGGGAGACC
CTTGCCGGGGCAGGGTGGCAGATCCCGGTGGTGTCGGTCAGCGAGGCTGGGGCCAGCGTCTACTCCGCCTCGGAGATCGC
CCGCGAGGAGTTCCCCGAACTGGACCTGACCGTGCGCGGGGCCATCTCCATCGGCCGGCGTCTGCAGGACCCCCTGGGCG
AACTGGTCAAGATCGATCCCAAGAGTATCGGGGTGGGGCAGTACCAGCACGACGTCAACCAGTCAATGCTCAAGAAGGCG
CTGGACGGCGTGGTGGAATCCTGTGTCAACTATGTGGGGGTCGATCTGAACACCGCCTCCTGGGCCCTGCTCTCCTATGT
CTCTGGCCTGGGACCTTCCCTGGCCAAGGCGGTCACTCGTTACCGCGACCAGAATGGCCCCTTCTCCTCCCGCACTACAT
TGATGAACGTCCCCCGCTTCGGCGCCAAGGCTTTCGAGCAGGCCGCCGGTTTCTTGAAAATCCGCAATGCAGGGCATCCG
CTGGATAACAGCGCCGTCCACCCCGAGCGCTATGCCCTGGTGGAGTCCATGGCCCGGGACCTGGGTGTCTCCCTGGGACA
CCTGGTGGCCGACCCGGCCCTGACAAAGCGCATCGACCCGAAGCGCTACCTGTCCGATGGCGTCGGCCTGCCGACTCTGA
ACGACATCCTGGAGGAACTTATGAAACCGGGACGTGACCCTCGCAGCCAGTTCCAGACAGCCGAATTCCGTGATGACATC
CGCAAGATCGAGGATCTGCGGGAGGGGATGGTGCTGCAGGGGGTGGTGACCAACGTGACCGCCTTCGGTGCCTTCGTGGA
CATCGGCGTCCACCAGGATGGGTTGGTGCACATCAGCCATCTGGCCAACCGCTTTGTCAAGAGCCCCCATGACGCGGTCC
AGGCCGGCCAACTGGTCAGGGTCAAGGTGCTTTCAGCCGACCCGAAGCGAAAGCGAATCTCCCTCTCTATCAGGGAGGCG
GAGCGGAAGTGA

Upstream 100 bases:

>100_bases
AACCCACTGCTGTCAACAGACACTGTCCGCGTACGCCGTTTCACATAGTGTTCCGCCCATCGATCCTATGTGGCGGGAAC
CGGAACCCAGAGGAGAAGCA

Downstream 100 bases:

>100_bases
GTAAGGCGTTAAGAGTGAGGGGTGAGGCGTAAGGGGGCGCGATTGACTTTGCCGGCGCACTCTGTTAGGTATAGACACCT
TTTTTGACGCTAAAAGGAGC

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 723; Mature: 723

Protein sequence:

>723_residues
MKPNNEQLAKIIEYIIDATGLGRGQVQNCVELLQGGATVPFIARYRKEMTGELDEVRIRDVEEQYVYFRELGERKLTVLN
SIEEQGKLTPELRQRIEASSKKTEVEDLYLPFKPKRRTKAIIARERGLEPLADIMAAQELFSGSPEEAAVPFVNPELEIP
DAAAALEGAGHILAERLSDDADSRDMVRRLTAEQGVIVSRVAADKKGQVTKFEMYYDYQESLREVPSHRMLAMRRGEKEE
VLYLSIVAPQEHILVGLKSRLIRGESVFRPLLERVVEDAYKRLIAPSIEVELRLDSKERADEAAIAVFAQNLRNLLLAPP
AGGKRVLGIDPGFRTGSKLAALDATGRFMEHVTIYPHTGEARIHQARQELLRLVETFDIEMIAVGNGTAGREMEIFSRET
LAGAGWQIPVVSVSEAGASVYSASEIAREEFPELDLTVRGAISIGRRLQDPLGELVKIDPKSIGVGQYQHDVNQSMLKKA
LDGVVESCVNYVGVDLNTASWALLSYVSGLGPSLAKAVTRYRDQNGPFSSRTTLMNVPRFGAKAFEQAAGFLKIRNAGHP
LDNSAVHPERYALVESMARDLGVSLGHLVADPALTKRIDPKRYLSDGVGLPTLNDILEELMKPGRDPRSQFQTAEFRDDI
RKIEDLREGMVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQAGQLVRVKVLSADPKRKRISLSIREA
ERK

Sequences:

>Translated_723_residues
MKPNNEQLAKIIEYIIDATGLGRGQVQNCVELLQGGATVPFIARYRKEMTGELDEVRIRDVEEQYVYFRELGERKLTVLN
SIEEQGKLTPELRQRIEASSKKTEVEDLYLPFKPKRRTKAIIARERGLEPLADIMAAQELFSGSPEEAAVPFVNPELEIP
DAAAALEGAGHILAERLSDDADSRDMVRRLTAEQGVIVSRVAADKKGQVTKFEMYYDYQESLREVPSHRMLAMRRGEKEE
VLYLSIVAPQEHILVGLKSRLIRGESVFRPLLERVVEDAYKRLIAPSIEVELRLDSKERADEAAIAVFAQNLRNLLLAPP
AGGKRVLGIDPGFRTGSKLAALDATGRFMEHVTIYPHTGEARIHQARQELLRLVETFDIEMIAVGNGTAGREMEIFSRET
LAGAGWQIPVVSVSEAGASVYSASEIAREEFPELDLTVRGAISIGRRLQDPLGELVKIDPKSIGVGQYQHDVNQSMLKKA
LDGVVESCVNYVGVDLNTASWALLSYVSGLGPSLAKAVTRYRDQNGPFSSRTTLMNVPRFGAKAFEQAAGFLKIRNAGHP
LDNSAVHPERYALVESMARDLGVSLGHLVADPALTKRIDPKRYLSDGVGLPTLNDILEELMKPGRDPRSQFQTAEFRDDI
RKIEDLREGMVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQAGQLVRVKVLSADPKRKRISLSIREA
ERK
>Mature_723_residues
MKPNNEQLAKIIEYIIDATGLGRGQVQNCVELLQGGATVPFIARYRKEMTGELDEVRIRDVEEQYVYFRELGERKLTVLN
SIEEQGKLTPELRQRIEASSKKTEVEDLYLPFKPKRRTKAIIARERGLEPLADIMAAQELFSGSPEEAAVPFVNPELEIP
DAAAALEGAGHILAERLSDDADSRDMVRRLTAEQGVIVSRVAADKKGQVTKFEMYYDYQESLREVPSHRMLAMRRGEKEE
VLYLSIVAPQEHILVGLKSRLIRGESVFRPLLERVVEDAYKRLIAPSIEVELRLDSKERADEAAIAVFAQNLRNLLLAPP
AGGKRVLGIDPGFRTGSKLAALDATGRFMEHVTIYPHTGEARIHQARQELLRLVETFDIEMIAVGNGTAGREMEIFSRET
LAGAGWQIPVVSVSEAGASVYSASEIAREEFPELDLTVRGAISIGRRLQDPLGELVKIDPKSIGVGQYQHDVNQSMLKKA
LDGVVESCVNYVGVDLNTASWALLSYVSGLGPSLAKAVTRYRDQNGPFSSRTTLMNVPRFGAKAFEQAAGFLKIRNAGHP
LDNSAVHPERYALVESMARDLGVSLGHLVADPALTKRIDPKRYLSDGVGLPTLNDILEELMKPGRDPRSQFQTAEFRDDI
RKIEDLREGMVLQGVVTNVTAFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQAGQLVRVKVLSADPKRKRISLSIREA
ERK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=793, Percent_Identity=31.1475409836066, Blast_Score=377, Evalue=1e-104,
Organism=Homo sapiens, GI27597090, Length=524, Percent_Identity=25, Blast_Score=86, Evalue=2e-16,
Organism=Escherichia coli, GI87082262, Length=713, Percent_Identity=49.7896213183731, Blast_Score=645, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=45.4545454545455, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI145693187, Length=85, Percent_Identity=48.2352941176471, Blast_Score=66, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=733, Percent_Identity=28.9222373806276, Blast_Score=239, Evalue=5e-63,
Organism=Caenorhabditis elegans, GI17552892, Length=291, Percent_Identity=28.8659793814433, Blast_Score=82, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6321552, Length=205, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI62484314, Length=770, Percent_Identity=31.9480519480519, Blast_Score=382, Evalue=1e-106,
Organism=Drosophila melanogaster, GI24640080, Length=398, Percent_Identity=23.1155778894472, Blast_Score=74, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 80171; Mature: 80171

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPNNEQLAKIIEYIIDATGLGRGQVQNCVELLQGGATVPFIARYRKEMTGELDEVRIRD
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
VEEQYVYFRELGERKLTVLNSIEEQGKLTPELRQRIEASSKKTEVEDLYLPFKPKRRTKA
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHEECCCCCCHHHHH
IIARERGLEPLADIMAAQELFSGSPEEAAVPFVNPELEIPDAAAALEGAGHILAERLSDD
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
ADSRDMVRRLTAEQGVIVSRVAADKKGQVTKFEMYYDYQESLREVPSHRMLAMRRGEKEE
CCHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEEECHHHHHHHCCHHHHHHHHCCCCCC
VLYLSIVAPQEHILVGLKSRLIRGESVFRPLLERVVEDAYKRLIAPSIEVELRLDSKERA
EEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
DEAAIAVFAQNLRNLLLAPPAGGKRVLGIDPGFRTGSKLAALDATGRFMEHVTIYPHTGE
HHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCEEEECHHHHHHHEEEEECCCCH
ARIHQARQELLRLVETFDIEMIAVGNGTAGREMEIFSRETLAGAGWQIPVVSVSEAGASV
HHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHH
YSASEIAREEFPELDLTVRGAISIGRRLQDPLGELVKIDPKSIGVGQYQHDVNQSMLKKA
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHH
LDGVVESCVNYVGVDLNTASWALLSYVSGLGPSLAKAVTRYRDQNGPFSSRTTLMNVPRF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCC
GAKAFEQAAGFLKIRNAGHPLDNSAVHPERYALVESMARDLGVSLGHLVADPALTKRIDP
CHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCCH
KRYLSDGVGLPTLNDILEELMKPGRDPRSQFQTAEFRDDIRKIEDLREGMVLQGVVTNVT
HHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQAGQLVRVKVLSADPKRKRISLSIREA
HHHHHHEECCCCCCHHHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCEEEEEHHHC
ERK
CCC
>Mature Secondary Structure
MKPNNEQLAKIIEYIIDATGLGRGQVQNCVELLQGGATVPFIARYRKEMTGELDEVRIRD
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
VEEQYVYFRELGERKLTVLNSIEEQGKLTPELRQRIEASSKKTEVEDLYLPFKPKRRTKA
HHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHEECCCCCCHHHHH
IIARERGLEPLADIMAAQELFSGSPEEAAVPFVNPELEIPDAAAALEGAGHILAERLSDD
HHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
ADSRDMVRRLTAEQGVIVSRVAADKKGQVTKFEMYYDYQESLREVPSHRMLAMRRGEKEE
CCHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEEECHHHHHHHCCHHHHHHHHCCCCCC
VLYLSIVAPQEHILVGLKSRLIRGESVFRPLLERVVEDAYKRLIAPSIEVELRLDSKERA
EEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
DEAAIAVFAQNLRNLLLAPPAGGKRVLGIDPGFRTGSKLAALDATGRFMEHVTIYPHTGE
HHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCCCCCEEEECHHHHHHHEEEEECCCCH
ARIHQARQELLRLVETFDIEMIAVGNGTAGREMEIFSRETLAGAGWQIPVVSVSEAGASV
HHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCHH
YSASEIAREEFPELDLTVRGAISIGRRLQDPLGELVKIDPKSIGVGQYQHDVNQSMLKKA
HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHH
LDGVVESCVNYVGVDLNTASWALLSYVSGLGPSLAKAVTRYRDQNGPFSSRTTLMNVPRF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCC
GAKAFEQAAGFLKIRNAGHPLDNSAVHPERYALVESMARDLGVSLGHLVADPALTKRIDP
CHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCHHHHCCCH
KRYLSDGVGLPTLNDILEELMKPGRDPRSQFQTAEFRDDIRKIEDLREGMVLQGVVTNVT
HHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AFGAFVDIGVHQDGLVHISHLANRFVKSPHDAVQAGQLVRVKVLSADPKRKRISLSIREA
HHHHHHEECCCCCCHHHHHHHHHHHHCCCHHHHHCCCEEEEEEECCCCCCCEEEEEHHHC
ERK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]