| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is rsbU [H]
Identifier: 118580045
GI number: 118580045
Start: 1737294
End: 1739621
Strand: Reverse
Name: rsbU [H]
Synonym: Ppro_1622
Alternate gene names: 118580045
Gene position: 1739621-1737294 (Counterclockwise)
Preceding gene: 118580065
Following gene: 118580044
Centisome position: 43.4
GC content: 60.65
Gene sequence:
>2328_bases ATGCCCCGCCCCCTCCACCGTTGGCCCCTTCTCGAAGCCGCCCCATCCCCCCCCTCTCCTTCCCTGCATCAATCGCCAGG ACAACGGGCAGGCGCCCTGATACTCCTTGTGGCCGTCATCATGATGATCGCCCTGCCCTGCGCCGCCTCGGCACAGGAGA CTCAGCACAGGCAGGTGCTGGTGCTGCACTCGTACCACAAGGGCTTCAAATGGACCGACGACATCAGCCAGGGCATAGCA TCCAGCCTGAACGAACAGGGGATCAAGACCAGGATCCACTACGAGTATATGGATACCAAGCGAGTGTCCGGTCCCCGCTA TACCGGGTTGCTGCGCGAGACCTACCGCCTGAAATTCAGCGCCATGAAATTCCGGGTGATCATCGCATCGGACAACGACG CCTTCGACTTTCTGCTCTCCTACCGCGACGACCTGTTTCCCGGAACGCCGGTGGTATTCTGCGGGGTCAATGACTTCGAG CCGTCCCAATTGCACGGCACGCGGCTCTTCACCGGTGTCAACGAGTCGGCCGACCTGGCAGCCACCTTCGACCTGGCCCT GAGACTCCACCCCTCGGTCAGGAGAATTGTCGTCATCAACGACACCACGACCACCGGTCGCATCATGCATCGCAAGATCG TATCCCTGATCCCCTCCCTCCGCAGACGCGTGGAGCTGACCTTTCTGGAAGCCGTGACCATCCCCGAGATCAGGGAAGAA TTGGCAAAGCTTGAGAGCGACAGCCTGGTGTTCTTTACCCTCTTCTTTCAGGACAGCAAAGGACGGTTTCTGGAGTATGA CGAGGCCATCTCGCTGCTCGCGCCCCTTTGCCCAGTCCCCATCTACGGAGTATGGGATTTCTACCTGGGCAACGGCATCG TGGGGGGCATGCTGACCAGCGGCTTTTCCCAGGGGAAGGCAGCCGCAAGAATCGCGGGGCGCATCCTGGAGGGTGAAGCT CCCCAGCGCATCCCGGTGGTGATGAAGAGCCCCAACAGCTTCATGTTCGACTACCAGCAACTGTCCAGGTTCCACATTCC CCGATCCGCCCTGCCGAAGGGCAGCATTATCATCAACAGTCCCGCCTCCCGCTACTCCGTGCCGCGCAGCGTCTTCTGGG GTGCGGTTGCCGCCCTGGTCGGTTCGGCCCTGATCATCCTGTTTCTGACCTACAACACCATACGACGCATGAGGGCCGAG GAACGCAGCCGGCGCCTGGCGGCAATCGTCGACTCATCCGATGACGCAATCATCGGCAAGACGCCGGACGGCGTCATTAC CAGCTGGAACAGGGGCGCCGCGAACAAGTTCGGCTATGGAGAGGAAGAGATGCTCGGCAAGTCAGTCACCCTTCTGGTTC CTCCCGAACAGCGGGACAACGTGCTTCGCGTCCACGAGAAGATCCGCCGCGGCGAGCATGTGGAACATTTTGAAACCGTA CACATGAGAAAGAATGGCGAACGAATCCACATGTCCCTCACCTTCTCGCCGGTGACCGACAGCCAGGGGCGGGTCATCGC CGTCTCCACCATCGGGCGCGACATCTCCGAGCGTAAGAGAGCCGAACAGCTGCTGCTGGAAAACGCTCTGATCAATAGGG AACTGGAAATTGCCCAGCAGATCCAGCAGTCCTTTCTGCAGGAGTGTCCCCAGGAACTACCCGGACTGCTCATGGCATGC CGCTGCGAACCAGCCGCCAAGGTGGGGGGTGACTACTACGACCTGTTCACCCCCCGGGAGGGGCTGGTGGATTGCGTCAT CGCCGACATCACCGGCCACAGCGTCGGTTCGGCCCTGCTGATGACAGAAACCCGCAGCGTCCTCCAGGCCGAGGTAACCC CCGGACGCACACCGGGACAACTGCTGGCCGAGGTGAACAACCTGCTGTACAACGACCTGTCACGTGCGGAGATGCAGTTG AGTATGTTCTATGCGCGCATCGACACGCCCAACCAGAGGCTCTCCTACGCCAACGCGGGACACTGCCGTCCGCTCCTGTA CCATTCCCGTGGCAAATCGGTGCAGGAACTTGATGCCGACGGCCTGATCCTGGGAATCAGGCGGGGTGTCTGCTTTGAAG AAGCCAGCATCGAGGTGGAAGCAGGGGATGTGCTGCTACTGTACACGGACGGTGTCATTGAAGCGGAACGAGATCGGGGA GAGTTCTTCGGCAGCGACCGACTGAGCCGACTGCTCACGGAGCAGCATGAACGGCATCCGCGGGAGATTATCGATAAAAT CCTGGCCGAGGTGACCCGTTTTACCAGGACCAGGGTACGAGCCGATGACATCGCCCTGTTCGTGGTCACATTCACCCCGG ATGCCTGA
Upstream 100 bases:
>100_bases ACGCTGCTTCCAGCCACCATCCGCTCCCCGCGAGCCGCCGCGAGTACATTGCGTACGTTCTCGTACCTGTCGCGATTCCA CATTCACAGGAGAGGATCAC
Downstream 100 bases:
>100_bases CCAGTGTATCGGCCGTTCCTCTCGTAGCAGAGACGTTCGCGGCGTGCCCGTTCAACGTCTGCAGCGCTCCCCTCCCCTTT TCTGGGCGTTCTATTCGGGG
Product: putative PAS/PAC sensor protein
Products: NA
Alternate protein names: Sigma factor sigB regulation protein rsbU [H]
Number of amino acids: Translated: 775; Mature: 774
Protein sequence:
>775_residues MPRPLHRWPLLEAAPSPPSPSLHQSPGQRAGALILLVAVIMMIALPCAASAQETQHRQVLVLHSYHKGFKWTDDISQGIA SSLNEQGIKTRIHYEYMDTKRVSGPRYTGLLRETYRLKFSAMKFRVIIASDNDAFDFLLSYRDDLFPGTPVVFCGVNDFE PSQLHGTRLFTGVNESADLAATFDLALRLHPSVRRIVVINDTTTTGRIMHRKIVSLIPSLRRRVELTFLEAVTIPEIREE LAKLESDSLVFFTLFFQDSKGRFLEYDEAISLLAPLCPVPIYGVWDFYLGNGIVGGMLTSGFSQGKAAARIAGRILEGEA PQRIPVVMKSPNSFMFDYQQLSRFHIPRSALPKGSIIINSPASRYSVPRSVFWGAVAALVGSALIILFLTYNTIRRMRAE ERSRRLAAIVDSSDDAIIGKTPDGVITSWNRGAANKFGYGEEEMLGKSVTLLVPPEQRDNVLRVHEKIRRGEHVEHFETV HMRKNGERIHMSLTFSPVTDSQGRVIAVSTIGRDISERKRAEQLLLENALINRELEIAQQIQQSFLQECPQELPGLLMAC RCEPAAKVGGDYYDLFTPREGLVDCVIADITGHSVGSALLMTETRSVLQAEVTPGRTPGQLLAEVNNLLYNDLSRAEMQL SMFYARIDTPNQRLSYANAGHCRPLLYHSRGKSVQELDADGLILGIRRGVCFEEASIEVEAGDVLLLYTDGVIEAERDRG EFFGSDRLSRLLTEQHERHPREIIDKILAEVTRFTRTRVRADDIALFVVTFTPDA
Sequences:
>Translated_775_residues MPRPLHRWPLLEAAPSPPSPSLHQSPGQRAGALILLVAVIMMIALPCAASAQETQHRQVLVLHSYHKGFKWTDDISQGIA SSLNEQGIKTRIHYEYMDTKRVSGPRYTGLLRETYRLKFSAMKFRVIIASDNDAFDFLLSYRDDLFPGTPVVFCGVNDFE PSQLHGTRLFTGVNESADLAATFDLALRLHPSVRRIVVINDTTTTGRIMHRKIVSLIPSLRRRVELTFLEAVTIPEIREE LAKLESDSLVFFTLFFQDSKGRFLEYDEAISLLAPLCPVPIYGVWDFYLGNGIVGGMLTSGFSQGKAAARIAGRILEGEA PQRIPVVMKSPNSFMFDYQQLSRFHIPRSALPKGSIIINSPASRYSVPRSVFWGAVAALVGSALIILFLTYNTIRRMRAE ERSRRLAAIVDSSDDAIIGKTPDGVITSWNRGAANKFGYGEEEMLGKSVTLLVPPEQRDNVLRVHEKIRRGEHVEHFETV HMRKNGERIHMSLTFSPVTDSQGRVIAVSTIGRDISERKRAEQLLLENALINRELEIAQQIQQSFLQECPQELPGLLMAC RCEPAAKVGGDYYDLFTPREGLVDCVIADITGHSVGSALLMTETRSVLQAEVTPGRTPGQLLAEVNNLLYNDLSRAEMQL SMFYARIDTPNQRLSYANAGHCRPLLYHSRGKSVQELDADGLILGIRRGVCFEEASIEVEAGDVLLLYTDGVIEAERDRG EFFGSDRLSRLLTEQHERHPREIIDKILAEVTRFTRTRVRADDIALFVVTFTPDA >Mature_774_residues PRPLHRWPLLEAAPSPPSPSLHQSPGQRAGALILLVAVIMMIALPCAASAQETQHRQVLVLHSYHKGFKWTDDISQGIAS SLNEQGIKTRIHYEYMDTKRVSGPRYTGLLRETYRLKFSAMKFRVIIASDNDAFDFLLSYRDDLFPGTPVVFCGVNDFEP SQLHGTRLFTGVNESADLAATFDLALRLHPSVRRIVVINDTTTTGRIMHRKIVSLIPSLRRRVELTFLEAVTIPEIREEL AKLESDSLVFFTLFFQDSKGRFLEYDEAISLLAPLCPVPIYGVWDFYLGNGIVGGMLTSGFSQGKAAARIAGRILEGEAP QRIPVVMKSPNSFMFDYQQLSRFHIPRSALPKGSIIINSPASRYSVPRSVFWGAVAALVGSALIILFLTYNTIRRMRAEE RSRRLAAIVDSSDDAIIGKTPDGVITSWNRGAANKFGYGEEEMLGKSVTLLVPPEQRDNVLRVHEKIRRGEHVEHFETVH MRKNGERIHMSLTFSPVTDSQGRVIAVSTIGRDISERKRAEQLLLENALINRELEIAQQIQQSFLQECPQELPGLLMACR CEPAAKVGGDYYDLFTPREGLVDCVIADITGHSVGSALLMTETRSVLQAEVTPGRTPGQLLAEVNNLLYNDLSRAEMQLS MFYARIDTPNQRLSYANAGHCRPLLYHSRGKSVQELDADGLILGIRRGVCFEEASIEVEAGDVLLLYTDGVIEAERDRGE FFGSDRLSRLLTEQHERHPREIIDKILAEVTRFTRTRVRADDIALFVVTFTPDA
Specific function: Positive regulator of sigma-B activity. Dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017944 - InterPro: IPR001932 - InterPro: IPR014787 - InterPro: IPR010822 - ProDom: PD685490 [H]
Pfam domain/function: PF08673 RsbU_N; PF07228 SpoIIE [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 86748; Mature: 86617
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS50112 PAS ; PS50113 PAC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPLHRWPLLEAAPSPPSPSLHQSPGQRAGALILLVAVIMMIALPCAASAQETQHRQVL CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE VLHSYHKGFKWTDDISQGIASSLNEQGIKTRIHYEYMDTKRVSGPRYTGLLRETYRLKFS EEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHEEE AMKFRVIIASDNDAFDFLLSYRDDLFPGTPVVFCGVNDFEPSQLHGTRLFTGVNESADLA EEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCE ATFDLALRLHPSVRRIVVINDTTTTGRIMHRKIVSLIPSLRRRVELTFLEAVTIPEIREE EEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEHHHHHCCCHHHHHH LAKLESDSLVFFTLFFQDSKGRFLEYDEAISLLAPLCPVPIYGVWDFYLGNGIVGGMLTS HHHCCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHC GFSQGKAAARIAGRILEGEAPQRIPVVMKSPNSFMFDYQQLSRFHIPRSALPKGSIIINS CCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEHHHHHHHCCCHHCCCCCCEEECC PASRYSVPRSVFWGAVAALVGSALIILFLTYNTIRRMRAEERSRRLAAIVDSSDDAIIGK CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEC TPDGVITSWNRGAANKFGYGEEEMLGKSVTLLVPPEQRDNVLRVHEKIRRGEHVEHFETV CCCCCEECCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHH HMRKNGERIHMSLTFSPVTDSQGRVIAVSTIGRDISERKRAEQLLLENALINRELEIAQQ HEECCCCEEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHH IQQSFLQECPQELPGLLMACRCEPAAKVGGDYYDLFTPREGLVDCVIADITGHSVGSALL HHHHHHHHHHHHHHHHHEECCCCCHHHCCCCEEECCCCCCHHHEEEEEECCCCCCCCCHH MTETRSVLQAEVTPGRTPGQLLAEVNNLLYNDLSRAEMQLSMFYARIDTPNQRLSYANAG HHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHCCCCCCC HCRPLLYHSRGKSVQELDADGLILGIRRGVCFEEASIEVEAGDVLLLYTDGVIEAERDRG CCCEEEEECCCCCHHHCCCCCEEEEECCCCEEECCCEEEECCCEEEEEECCCEEECCCCC EFFGSDRLSRLLTEQHERHPREIIDKILAEVTRFTRTRVRADDIALFVVTFTPDA HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC >Mature Secondary Structure PRPLHRWPLLEAAPSPPSPSLHQSPGQRAGALILLVAVIMMIALPCAASAQETQHRQVL CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE VLHSYHKGFKWTDDISQGIASSLNEQGIKTRIHYEYMDTKRVSGPRYTGLLRETYRLKFS EEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHEEE AMKFRVIIASDNDAFDFLLSYRDDLFPGTPVVFCGVNDFEPSQLHGTRLFTGVNESADLA EEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCE ATFDLALRLHPSVRRIVVINDTTTTGRIMHRKIVSLIPSLRRRVELTFLEAVTIPEIREE EEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEHHHHHCCCHHHHHH LAKLESDSLVFFTLFFQDSKGRFLEYDEAISLLAPLCPVPIYGVWDFYLGNGIVGGMLTS HHHCCCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHC GFSQGKAAARIAGRILEGEAPQRIPVVMKSPNSFMFDYQQLSRFHIPRSALPKGSIIINS CCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEHHHHHHHCCCHHCCCCCCEEECC PASRYSVPRSVFWGAVAALVGSALIILFLTYNTIRRMRAEERSRRLAAIVDSSDDAIIGK CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEC TPDGVITSWNRGAANKFGYGEEEMLGKSVTLLVPPEQRDNVLRVHEKIRRGEHVEHFETV CCCCCEECCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHH HMRKNGERIHMSLTFSPVTDSQGRVIAVSTIGRDISERKRAEQLLLENALINRELEIAQQ HEECCCCEEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHH IQQSFLQECPQELPGLLMACRCEPAAKVGGDYYDLFTPREGLVDCVIADITGHSVGSALL HHHHHHHHHHHHHHHHHEECCCCCHHHCCCCEEECCCCCCHHHEEEEEECCCCCCCCCHH MTETRSVLQAEVTPGRTPGQLLAEVNNLLYNDLSRAEMQLSMFYARIDTPNQRLSYANAG HHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHCCCCCCC HCRPLLYHSRGKSVQELDADGLILGIRRGVCFEEASIEVEAGDVLLLYTDGVIEAERDRG CCCEEEEECCCCCHHHCCCCCEEEEECCCCEEECCCEEEECCCEEEEEECCCEEECCCCC EFFGSDRLSRLLTEQHERHPREIIDKILAEVTRFTRTRVRADDIALFVVTFTPDA HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8002610; 8002609; 9384377; 8824586; 9786195; 12499568 [H]