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The map label for this gene is atpD1 [H]

Identifier: 118579930

GI number: 118579930

Start: 1612331

End: 1613746

Strand: Direct

Name: atpD1 [H]

Synonym: Ppro_1507

Alternate gene names: 118579930

Gene position: 1612331-1613746 (Clockwise)

Preceding gene: 118579929

Following gene: 118579931

Centisome position: 40.23

GC content: 64.62

Gene sequence:

>1416_bases
ATGAGTCAGAATACAGGAAAAATCACACAGGTTATCGGCGCGGTCGTGGACGTGGAGTTCGAGCCGGGCAAGCTGCCGGA
GATCTACCACGCCCTGCGCGTCACCAACCCGGCGATCAACGACAGCGAGAACAACCTGGTGCTGGAGGTTGCCCAGCATC
TGGGTGAGAACTCCGTGCGCACCATTGCCATGGACTCCACCGACGGTCTCAAGCGGGGCCAGGCGGTCCTGGACACGGGC
AAGCAGATCTGCGCGCCGGTGGGTAAGAAGACCCTGGGCAGGATCATCAACGTCATCGGCGAGCCGGTGGACGAGATGGG
GCCCATTGGCAACGACAAGGAGAATCCGATCCACCGTGAGGCTCCCCCCTTCGAGGACCAGTCCACCAAGGTGGAGGCCT
TTACCACCGGCATCAAGGTTGTGGACCTGCTGGCCCCCTATGCCCGCGGCGGCAAGATCGGCCTGTTCGGCGGCGCCGGG
GTGGGCAAGACGGTTCTGATCATGGAGCTGATCAACAACATCGCCCGCCAGCACGGCGGCTTCTCGGTCTTTGCCGGGGT
CGGCGAGCGCACCCGCGAGGGGAACGACCTCTGGATGGAGATGAAGGAGACCGGGGTTCTGGAGAAGACCGCCCTGGTGT
ACGGCCAGATGAACGAGCCGCCCGGCGCCCGCGCCAGGGTCGCCCTGACCGCCCTCTCCATCGCCGAACACTTCCGCGAC
GACGAAGGGCTGGACGTGCTGCTCTTCATCGACAACATCTTCCGCTTCACCCAGGCCGGCTCCGAGGTCTCGGCCCTGTT
GGGGCGCATCCCCTCGGCGGTCGGCTACCAGCCCACCCTGGCCACGGAGATGGGCGAGCTGCAGGAGCGGATCACCTCCA
CCAAGAACGGCTCCATCACCTCGGTGCAGGCCATCTACGTGCCGGCCGACGACCTGACCGACCCGGCGCCGGCCACCGCC
TTCGCCCACCTGGACGCCACCACCGTGCTTTCGCGTCAGATAGCCGAGCTGGGCATCTACCCGGCCGTTGACCCGCTGGA
CTCCACCTCGCGCATCCTGGATCCGCAGATCATCGGCGAGGAGCATTACGCCATCGCCCGCCAGGTGCAGTACATCCTGC
AGAAGTACAAGGACCTGCAGGACATCATCGCCATCCTGGGCATGGACGAACTCTCCGAGGAGGATAAGCTGATCGTTGCC
CGGGCGCGCAAGATCCAGCGCTTTCTCTCCCAGCCGTTCTTCGTGGCCGAAGTCTTCACCGGCTCCCCGGGCAAGTACGT
GGAGCTGAAGGACACCATCAAGGGTTTTCAGGAGATCGTTTCCGGCAAGCATGACCACCTCCCCGAGCAGGCCTTCTACA
TGGTCGGTTCCATCGAGGAGGCGGTGGAGAAGGCCGCCAAGCTGGCCGCGGTGTAG

Upstream 100 bases:

>100_bases
CGCCAGGCAGCCATCACCACCGAGCTGATGGAGATCATCTCCGGCTCTGAATCCATAAAAGGATAAGAAACCCCAAAAGT
TCACGGGAGGATACCGTTCA

Downstream 100 bases:

>100_bases
GGGGGACCATGCACGGGCACTCACACAGGGGGGTGCCCCTACGGAGATCAACGTATGGCTGAAAAGATGAAGCTTGAGAT
TATAACACCCTATGCCAAGG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MSQNTGKITQVIGAVVDVEFEPGKLPEIYHALRVTNPAINDSENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVLDTG
KQICAPVGKKTLGRIINVIGEPVDEMGPIGNDKENPIHREAPPFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAG
VGKTVLIMELINNIARQHGGFSVFAGVGERTREGNDLWMEMKETGVLEKTALVYGQMNEPPGARARVALTALSIAEHFRD
DEGLDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTKNGSITSVQAIYVPADDLTDPAPATA
FAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQIIGEEHYAIARQVQYILQKYKDLQDIIAILGMDELSEEDKLIVA
RARKIQRFLSQPFFVAEVFTGSPGKYVELKDTIKGFQEIVSGKHDHLPEQAFYMVGSIEEAVEKAAKLAAV

Sequences:

>Translated_471_residues
MSQNTGKITQVIGAVVDVEFEPGKLPEIYHALRVTNPAINDSENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVLDTG
KQICAPVGKKTLGRIINVIGEPVDEMGPIGNDKENPIHREAPPFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAG
VGKTVLIMELINNIARQHGGFSVFAGVGERTREGNDLWMEMKETGVLEKTALVYGQMNEPPGARARVALTALSIAEHFRD
DEGLDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTKNGSITSVQAIYVPADDLTDPAPATA
FAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQIIGEEHYAIARQVQYILQKYKDLQDIIAILGMDELSEEDKLIVA
RARKIQRFLSQPFFVAEVFTGSPGKYVELKDTIKGFQEIVSGKHDHLPEQAFYMVGSIEEAVEKAAKLAAV
>Mature_470_residues
SQNTGKITQVIGAVVDVEFEPGKLPEIYHALRVTNPAINDSENNLVLEVAQHLGENSVRTIAMDSTDGLKRGQAVLDTGK
QICAPVGKKTLGRIINVIGEPVDEMGPIGNDKENPIHREAPPFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGV
GKTVLIMELINNIARQHGGFSVFAGVGERTREGNDLWMEMKETGVLEKTALVYGQMNEPPGARARVALTALSIAEHFRDD
EGLDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTKNGSITSVQAIYVPADDLTDPAPATAF
AHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQIIGEEHYAIARQVQYILQKYKDLQDIIAILGMDELSEEDKLIVAR
ARKIQRFLSQPFFVAEVFTGSPGKYVELKDTIKGFQEIVSGKHDHLPEQAFYMVGSIEEAVEKAAKLAAV

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=471, Percent_Identity=76.4331210191083, Blast_Score=707, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=371, Percent_Identity=26.9541778975741, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI19913424, Length=317, Percent_Identity=28.0757097791798, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI19913426, Length=407, Percent_Identity=26.7813267813268, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI50345984, Length=294, Percent_Identity=25.8503401360544, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI4757810, Length=294, Percent_Identity=25.8503401360544, Blast_Score=98, Evalue=2e-20,
Organism=Escherichia coli, GI1790170, Length=464, Percent_Identity=72.198275862069, Blast_Score=668, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=314, Percent_Identity=33.1210191082803, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790172, Length=318, Percent_Identity=26.7295597484277, Blast_Score=112, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=71.7622080679405, Blast_Score=668, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17510931, Length=361, Percent_Identity=27.1468144044321, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=417, Percent_Identity=25.8992805755396, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17565854, Length=315, Percent_Identity=27.9365079365079, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71988080, Length=314, Percent_Identity=25.1592356687898, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=314, Percent_Identity=25.1592356687898, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=266, Percent_Identity=25.187969924812, Blast_Score=89, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6322581, Length=463, Percent_Identity=74.0820734341253, Blast_Score=694, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=365, Percent_Identity=28.7671232876712, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6319370, Length=356, Percent_Identity=25.8426966292135, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=251, Percent_Identity=24.7011952191235, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24638766, Length=471, Percent_Identity=76.6454352441614, Blast_Score=701, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=471, Percent_Identity=68.7898089171974, Blast_Score=644, Evalue=0.0,
Organism=Drosophila melanogaster, GI20129479, Length=328, Percent_Identity=27.4390243902439, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI281361666, Length=392, Percent_Identity=27.5510204081633, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24646341, Length=392, Percent_Identity=27.5510204081633, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI17136796, Length=392, Percent_Identity=27.5510204081633, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24638768, Length=97, Percent_Identity=64.9484536082474, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24583988, Length=315, Percent_Identity=27.3015873015873, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24583986, Length=315, Percent_Identity=27.3015873015873, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24583984, Length=315, Percent_Identity=27.3015873015873, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24583992, Length=318, Percent_Identity=26.1006289308176, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24658560, Length=314, Percent_Identity=23.8853503184713, Blast_Score=89, Evalue=5e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51133; Mature: 51002

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNTGKITQVIGAVVDVEFEPGKLPEIYHALRVTNPAINDSENNLVLEVAQHLGENSVR
CCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEE
TIAMDSTDGLKRGQAVLDTGKQICAPVGKKTLGRIINVIGEPVDEMGPIGNDKENPIHRE
EEEECCCCCHHHCHHHHHCCHHHHHHCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCC
APPFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIARQHGG
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
FSVFAGVGERTREGNDLWMEMKETGVLEKTALVYGQMNEPPGARARVALTALSIAEHFRD
EEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHCC
DEGLDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTKNGSIT
CCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEE
SVQAIYVPADDLTDPAPATAFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQIIGE
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHCCC
EHYAIARQVQYILQKYKDLQDIIAILGMDELSEEDKLIVARARKIQRFLSQPFFVAEVFT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEE
GSPGKYVELKDTIKGFQEIVSGKHDHLPEQAFYMVGSIEEAVEKAAKLAAV
CCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQNTGKITQVIGAVVDVEFEPGKLPEIYHALRVTNPAINDSENNLVLEVAQHLGENSVR
CCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEE
TIAMDSTDGLKRGQAVLDTGKQICAPVGKKTLGRIINVIGEPVDEMGPIGNDKENPIHRE
EEEECCCCCHHHCHHHHHCCHHHHHHCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCC
APPFEDQSTKVEAFTTGIKVVDLLAPYARGGKIGLFGGAGVGKTVLIMELINNIARQHGG
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC
FSVFAGVGERTREGNDLWMEMKETGVLEKTALVYGQMNEPPGARARVALTALSIAEHFRD
EEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHCC
DEGLDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGELQERITSTKNGSIT
CCCCEEEEHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEE
SVQAIYVPADDLTDPAPATAFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPQIIGE
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHHCCC
EHYAIARQVQYILQKYKDLQDIIAILGMDELSEEDKLIVARARKIQRFLSQPFFVAEVFT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEEE
GSPGKYVELKDTIKGFQEIVSGKHDHLPEQAFYMVGSIEEAVEKAAKLAAV
CCCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA