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The map label for this gene is rcoM2 [H]

Identifier: 118579919

GI number: 118579919

Start: 1604575

End: 1605279

Strand: Direct

Name: rcoM2 [H]

Synonym: Ppro_1495

Alternate gene names: 118579919

Gene position: 1604575-1605279 (Clockwise)

Preceding gene: 118579918

Following gene: 118579921

Centisome position: 40.03

GC content: 54.18

Gene sequence:

>705_bases
GTGGGGGTTACTAACGTCCTCAGCATCATCGAACAAATTGAGCCGGGAGTCGTGATCCTCAACCAAGATTTGAGCGTGTC
CCACATCAACCGGGTGTTCATGCTGCTTTTTTGCGACATTCCCCTGGAACAGTTGTTCCTGGGGAGTATTCTGGAGATTC
ATCGCCAGGAGAGTCGCGACAGGGTCAGAGATATGCTCAGGCTCGCGGCGGAGGCGAAACGCCAGGTGCCAACCACCATC
AGGTTCATTCGCAATGACGACAAGGACCGCTACCTCCTGATCAAGCTCGTTCCTCTGGTTGATCGGGAAATGACTGAAGA
GAAGATCAGCGCCCTGTTCTATGACGTTACCCCCTTTATCACCACCGAGCAGAAGCTGATGCGGGTTCCTGTCAGCTCCC
ACGGTGAAATCCACCTGCTCAATCCCCATGAGATCCTCTATTTCAAGGCGGACAACATCTACACCACGGTCAGGACCGAG
ACGTGTGAATATCACTGCGCCCTCTCGCTCGGTGCGGTGGAAAAACGCCTTTCCCACGAGATGTTTCACCGCGTCCATCG
CAGCTATCTGGTCAATATCGGCAAGGTTCACAAGATCCTGCGCGACCCCTCCGAGTGTTCGGTGGATGTCGTCGGAGGTG
AAGTTCGTATTCCCATCAGCCGTGACAAGATGCAGGATTTCCTGTCCATCGTTGGCTTGAAGTAG

Upstream 100 bases:

>100_bases
TGGCAGGAACGACCGTACGAGACGGCCATTGTTCTTGGCTGCTTGGGGTGAATTAGTGTATACAGTATACGGGTTCGTGT
GGCACGAAAGGAGGTAGCGA

Downstream 100 bases:

>100_bases
CTCAATTCCCTTCACCAGATAATTCCCACCATTCACAAGTCCCTGCCCCATTCCGCAAGCGAAGAGTTGATTGCATCACC
CCACCTGGTTTAGGTTGCTT

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: Regulator of CO metabolism 2; RCOM-2 [H]

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MGVTNVLSIIEQIEPGVVILNQDLSVSHINRVFMLLFCDIPLEQLFLGSILEIHRQESRDRVRDMLRLAAEAKRQVPTTI
RFIRNDDKDRYLLIKLVPLVDREMTEEKISALFYDVTPFITTEQKLMRVPVSSHGEIHLLNPHEILYFKADNIYTTVRTE
TCEYHCALSLGAVEKRLSHEMFHRVHRSYLVNIGKVHKILRDPSECSVDVVGGEVRIPISRDKMQDFLSIVGLK

Sequences:

>Translated_234_residues
MGVTNVLSIIEQIEPGVVILNQDLSVSHINRVFMLLFCDIPLEQLFLGSILEIHRQESRDRVRDMLRLAAEAKRQVPTTI
RFIRNDDKDRYLLIKLVPLVDREMTEEKISALFYDVTPFITTEQKLMRVPVSSHGEIHLLNPHEILYFKADNIYTTVRTE
TCEYHCALSLGAVEKRLSHEMFHRVHRSYLVNIGKVHKILRDPSECSVDVVGGEVRIPISRDKMQDFLSIVGLK
>Mature_233_residues
GVTNVLSIIEQIEPGVVILNQDLSVSHINRVFMLLFCDIPLEQLFLGSILEIHRQESRDRVRDMLRLAAEAKRQVPTTIR
FIRNDDKDRYLLIKLVPLVDREMTEEKISALFYDVTPFITTEQKLMRVPVSSHGEIHLLNPHEILYFKADNIYTTVRTET
CEYHCALSLGAVEKRLSHEMFHRVHRSYLVNIGKVHKILRDPSECSVDVVGGEVRIPISRDKMQDFLSIVGLK

Specific function: One-component, b-type heme-containing aerobic sensor and transcriptional regulator that responds to CO by activating the expression of the oxidation operon cox [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007492 [H]

Pfam domain/function: PF04397 LytTR [H]

EC number: NA

Molecular weight: Translated: 27048; Mature: 26917

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00028 ZINC_FINGER_C2H2_1 ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVTNVLSIIEQIEPGVVILNQDLSVSHINRVFMLLFCDIPLEQLFLGSILEIHRQESRD
CCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RVRDMLRLAAEAKRQVPTTIRFIRNDDKDRYLLIKLVPLVDREMTEEKISALFYDVTPFI
HHHHHHHHHHHHHHCCCHHHHHEECCCCCCEEEEEEECHHCHHHHHHHHHHHHHHCCCCE
TTEQKLMRVPVSSHGEIHLLNPHEILYFKADNIYTTVRTETCEYHCALSLGAVEKRLSHE
ECCHHHHCCCCCCCCCEEEECCCEEEEEECCCEEEEEEECCCEEEEEEHHHHHHHHHHHH
MFHRVHRSYLVNIGKVHKILRDPSECSVDVVGGEVRIPISRDKMQDFLSIVGLK
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVTNVLSIIEQIEPGVVILNQDLSVSHINRVFMLLFCDIPLEQLFLGSILEIHRQESRD
CHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RVRDMLRLAAEAKRQVPTTIRFIRNDDKDRYLLIKLVPLVDREMTEEKISALFYDVTPFI
HHHHHHHHHHHHHHCCCHHHHHEECCCCCCEEEEEEECHHCHHHHHHHHHHHHHHCCCCE
TTEQKLMRVPVSSHGEIHLLNPHEILYFKADNIYTTVRTETCEYHCALSLGAVEKRLSHE
ECCHHHHCCCCCCCCCEEEECCCEEEEEECCCEEEEEEECCCEEEEEEHHHHHHHHHHHH
MFHRVHRSYLVNIGKVHKILRDPSECSVDVVGGEVRIPISRDKMQDFLSIVGLK
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA