| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is irgA [H]
Identifier: 118579905
GI number: 118579905
Start: 1585716
End: 1587740
Strand: Direct
Name: irgA [H]
Synonym: Ppro_1481
Alternate gene names: 118579905
Gene position: 1585716-1587740 (Clockwise)
Preceding gene: 118579904
Following gene: 118579906
Centisome position: 39.56
GC content: 55.31
Gene sequence:
>2025_bases ATGCGCTTACCCAGGAGACCTGGCTTGGTGGCGCCGGTACTGGCGCTGACGATGATGTCGTCGCCGGCCCTGGCTGATGA ACAAGTGACGAAGAGTGAAGAAAACGGTGACGTATTTACCTTGGGCAGGGTAGAAGTGATCGGCACGTCCGAGAGCATCA AACACCCCGCAGTGGAAGTGGTCAGTAGCGAGGACATGCTCCAGTTTGATACCGAAACCATCTCCGAGGCGGCCAACCTG GTTCCCGGCGTCACGCTTTCCCGAAAGGGGGGGCGGAATGAGTCGACGGTCTACGTGCGTGGTTTCGATTTGCGGCGTAC CCCCCTCTATCTTGATGGAATCCCGATCTATTTTCCCTACGATGGCTACCCGGACCTGGGACGCTTCTTTACCTATGATC TGTCGGAACTGGTCATCTCCAAGGGCTTTGCGTCAGTGCTCTACGGCCCCAACACCATGGGGGGCGCCATCAACATGGTT TCCAGACGTCCCACCAGGGAGTTCGAGGGGGATGCCGGCGCCGGCTATAGCTCTGTGGACCAGTACCACACGTTCGCAAA CTTCGGAACCAGGCAAAAGAACTGGTATTTCCAGGGGGGCGGCTCTTGGTTCGGCAGCAACGGCTTCGAAATGTCGGAAC ACTTTCACAACAGAACGTACGAGAACGGAGGCAAGCGCAATAACGCCTTTCAGGAGGATTGGAAGGTCAGCGGCAAACTG GGGCTGACACCCAACAGCACCGACGAATATGCCCTGACCTACATCTATCAGAACGGTGAAAAGGGGCAGCCACTCTATAC CGGAGACAATCCTGACGAAAAAATCAAGTTCTGGCGCTGGCCCTACTGGAGGAAGCAGAGCCTGTACTTCACCTCGCACA CCGCCATTGGTGACAAGAGCTACCTCAAGACGCGCACCTATTATGACAAGTTCAAGAACTCATTGGAGTATTTCACCGAT TCCACCTACAGCGCACTGGACAAGAACATGGGCTACAGGAGCAGATACGACGACTCTACGGTCGGCTGCTCCCTTGAGGT GGGGACGTCCCTGATCGCCAACAATGAACTCAAGATGGCCTTCCACTTCAAGGATGATGTTCATCGCGAAGAGACGCTCA CTACTCCCCGGCAGCGCTTCGAGGATCGGGTCTACTCATTTGCCTTGGAGGATACCATCCGGTTCACCGAAAAACTCTCG GCCATCATCGGAGTCAGTTACGACATCCTGGACGGGGTACAGGCGCATAAATATGACTCAAAAAGCACTGCCTACTTTGA CGCGCCACTTGCCGACGAGGATGCCCTGAATCCCCAGGGAACCCTGATGTATTCCTATTCGGATACCGGGAAGGCGCATG CTTCCGTGGCCATGAAAACCCGCTTTGCCTCGATGAAAGAGAGAACCACGATGGGGCTTGACGGAACCACTATTCCCAAT CCGGACCTGAAACCTGAAACGACCATCAACTACGAACTGGGTGTTCAGGATGTCATCGCCGGTCTCGTTAAGGTCAAGTC AAGCTTTTTCTTTAACGATATCAGGGACTATATCGAAGGTGTCGTGATCGGCTCCGTGCTCGTCAATGGCAAGCCGAAAG ATCAGAAGCAGATCCGGAACATCGGCCGGGTTCAGCGCTACGGCTATGAACTGGAGGCGGTAGCGCCCATTAGCGACAGG ATCGAAGCCGGCTTCAACTACACCTTAATGTACAACAAGAACAGGAGCGGTGACGAACCCATAACCGACCTCCCCAAGCA CAAATTCTTCGTCTATGGCACGTACTCCCCCGTCAAGGCGCTGACTCTGTTGGCCTCGCTGGAGTACGACACCAAGCGCT ACGGGGACGCCGGCTATAATGCCGGCGAGTTTGTGGTTATCAATACCAAGGCGAGCTACGAACCGCTCAAGGGTGTCATG GTGGAGGTGGGCGTCAATAACCTTCTGGACCGGGATTACGAGCTGGCCGAGGGGTATCCGGAGCCGGGACGCACCTTTTT CGTTCAGGCACGCTACAAGTGGTGA
Upstream 100 bases:
>100_bases GTAGGGATGTGTTTCATAAGAACATGAAATGGTGTTTCTTAACTGCTTGATATTTTATGAGAAGAGGAGAGGAAACGTGA AACAGCGATGGTGCGCCTGT
Downstream 100 bases:
>100_bases AGGGGTGACAACAGAAAATCCGATTAGCACTCATCTTTAGCTTGATTGAAACCAATGCTCCCCCCTTTGAAAAGGGGGAC TGGGGGGGATTTATTGGCGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 674; Mature: 674
Protein sequence:
>674_residues MRLPRRPGLVAPVLALTMMSSPALADEQVTKSEENGDVFTLGRVEVIGTSESIKHPAVEVVSSEDMLQFDTETISEAANL VPGVTLSRKGGRNESTVYVRGFDLRRTPLYLDGIPIYFPYDGYPDLGRFFTYDLSELVISKGFASVLYGPNTMGGAINMV SRRPTREFEGDAGAGYSSVDQYHTFANFGTRQKNWYFQGGGSWFGSNGFEMSEHFHNRTYENGGKRNNAFQEDWKVSGKL GLTPNSTDEYALTYIYQNGEKGQPLYTGDNPDEKIKFWRWPYWRKQSLYFTSHTAIGDKSYLKTRTYYDKFKNSLEYFTD STYSALDKNMGYRSRYDDSTVGCSLEVGTSLIANNELKMAFHFKDDVHREETLTTPRQRFEDRVYSFALEDTIRFTEKLS AIIGVSYDILDGVQAHKYDSKSTAYFDAPLADEDALNPQGTLMYSYSDTGKAHASVAMKTRFASMKERTTMGLDGTTIPN PDLKPETTINYELGVQDVIAGLVKVKSSFFFNDIRDYIEGVVIGSVLVNGKPKDQKQIRNIGRVQRYGYELEAVAPISDR IEAGFNYTLMYNKNRSGDEPITDLPKHKFFVYGTYSPVKALTLLASLEYDTKRYGDAGYNAGEFVVINTKASYEPLKGVM VEVGVNNLLDRDYELAEGYPEPGRTFFVQARYKW
Sequences:
>Translated_674_residues MRLPRRPGLVAPVLALTMMSSPALADEQVTKSEENGDVFTLGRVEVIGTSESIKHPAVEVVSSEDMLQFDTETISEAANL VPGVTLSRKGGRNESTVYVRGFDLRRTPLYLDGIPIYFPYDGYPDLGRFFTYDLSELVISKGFASVLYGPNTMGGAINMV SRRPTREFEGDAGAGYSSVDQYHTFANFGTRQKNWYFQGGGSWFGSNGFEMSEHFHNRTYENGGKRNNAFQEDWKVSGKL GLTPNSTDEYALTYIYQNGEKGQPLYTGDNPDEKIKFWRWPYWRKQSLYFTSHTAIGDKSYLKTRTYYDKFKNSLEYFTD STYSALDKNMGYRSRYDDSTVGCSLEVGTSLIANNELKMAFHFKDDVHREETLTTPRQRFEDRVYSFALEDTIRFTEKLS AIIGVSYDILDGVQAHKYDSKSTAYFDAPLADEDALNPQGTLMYSYSDTGKAHASVAMKTRFASMKERTTMGLDGTTIPN PDLKPETTINYELGVQDVIAGLVKVKSSFFFNDIRDYIEGVVIGSVLVNGKPKDQKQIRNIGRVQRYGYELEAVAPISDR IEAGFNYTLMYNKNRSGDEPITDLPKHKFFVYGTYSPVKALTLLASLEYDTKRYGDAGYNAGEFVVINTKASYEPLKGVM VEVGVNNLLDRDYELAEGYPEPGRTFFVQARYKW >Mature_674_residues MRLPRRPGLVAPVLALTMMSSPALADEQVTKSEENGDVFTLGRVEVIGTSESIKHPAVEVVSSEDMLQFDTETISEAANL VPGVTLSRKGGRNESTVYVRGFDLRRTPLYLDGIPIYFPYDGYPDLGRFFTYDLSELVISKGFASVLYGPNTMGGAINMV SRRPTREFEGDAGAGYSSVDQYHTFANFGTRQKNWYFQGGGSWFGSNGFEMSEHFHNRTYENGGKRNNAFQEDWKVSGKL GLTPNSTDEYALTYIYQNGEKGQPLYTGDNPDEKIKFWRWPYWRKQSLYFTSHTAIGDKSYLKTRTYYDKFKNSLEYFTD STYSALDKNMGYRSRYDDSTVGCSLEVGTSLIANNELKMAFHFKDDVHREETLTTPRQRFEDRVYSFALEDTIRFTEKLS AIIGVSYDILDGVQAHKYDSKSTAYFDAPLADEDALNPQGTLMYSYSDTGKAHASVAMKTRFASMKERTTMGLDGTTIPN PDLKPETTINYELGVQDVIAGLVKVKSSFFFNDIRDYIEGVVIGSVLVNGKPKDQKQIRNIGRVQRYGYELEAVAPISDR IEAGFNYTLMYNKNRSGDEPITDLPKHKFFVYGTYSPVKALTLLASLEYDTKRYGDAGYNAGEFVVINTKASYEPLKGVM VEVGVNNLLDRDYELAEGYPEPGRTFFVQARYKW
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=323, Percent_Identity=24.1486068111455, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 76157; Mature: 76157
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPRRPGLVAPVLALTMMSSPALADEQVTKSEENGDVFTLGRVEVIGTSESIKHPAVEV CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHEE VSSEDMLQFDTETISEAANLVPGVTLSRKGGRNESTVYVRGFDLRRTPLYLDGIPIYFPY ECCCCCEEECHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCCCEEECCEEEEECC DGYPDLGRFFTYDLSELVISKGFASVLYGPNTMGGAINMVSRRPTREFEGDAGAGYSSVD CCCCCCHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHH QYHTFANFGTRQKNWYFQGGGSWFGSNGFEMSEHFHNRTYENGGKRNNAFQEDWKVSGKL HHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHEECCEE GLTPNSTDEYALTYIYQNGEKGQPLYTGDNPDEKIKFWRWPYWRKQSLYFTSHTAIGDKS CCCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHH YLKTRTYYDKFKNSLEYFTDSTYSALDKNMGYRSRYDDSTVGCSLEVGTSLIANNELKMA HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEECCCEEEE FHFKDDVHREETLTTPRQRFEDRVYSFALEDTIRFTEKLSAIIGVSYDILDGVQAHKYDS EECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCC KSTAYFDAPLADEDALNPQGTLMYSYSDTGKAHASVAMKTRFASMKERTTMGLDGTTIPN CCCEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PDLKPETTINYELGVQDVIAGLVKVKSSFFFNDIRDYIEGVVIGSVLVNGKPKDQKQIRN CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHH IGRVQRYGYELEAVAPISDRIEAGFNYTLMYNKNRSGDEPITDLPKHKFFVYGTYSPVKA HHHHHHCCCCEEEECCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHH LTLLASLEYDTKRYGDAGYNAGEFVVINTKASYEPLKGVMVEVGVNNLLDRDYELAEGYP HHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHHCCCCHHHCCCC EPGRTFFVQARYKW CCCCEEEEEEEECC >Mature Secondary Structure MRLPRRPGLVAPVLALTMMSSPALADEQVTKSEENGDVFTLGRVEVIGTSESIKHPAVEV CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEEEEEEECCCCCCCCHHEE VSSEDMLQFDTETISEAANLVPGVTLSRKGGRNESTVYVRGFDLRRTPLYLDGIPIYFPY ECCCCCEEECHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCCCEEECCEEEEECC DGYPDLGRFFTYDLSELVISKGFASVLYGPNTMGGAINMVSRRPTREFEGDAGAGYSSVD CCCCCCHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHH QYHTFANFGTRQKNWYFQGGGSWFGSNGFEMSEHFHNRTYENGGKRNNAFQEDWKVSGKL HHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHEECCEE GLTPNSTDEYALTYIYQNGEKGQPLYTGDNPDEKIKFWRWPYWRKQSLYFTSHTAIGDKS CCCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHH YLKTRTYYDKFKNSLEYFTDSTYSALDKNMGYRSRYDDSTVGCSLEVGTSLIANNELKMA HHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEECCCEEEE FHFKDDVHREETLTTPRQRFEDRVYSFALEDTIRFTEKLSAIIGVSYDILDGVQAHKYDS EECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHCCCC KSTAYFDAPLADEDALNPQGTLMYSYSDTGKAHASVAMKTRFASMKERTTMGLDGTTIPN CCCEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PDLKPETTINYELGVQDVIAGLVKVKSSFFFNDIRDYIEGVVIGSVLVNGKPKDQKQIRN CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHH IGRVQRYGYELEAVAPISDRIEAGFNYTLMYNKNRSGDEPITDLPKHKFFVYGTYSPVKA HHHHHHCCCCEEEECCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHH LTLLASLEYDTKRYGDAGYNAGEFVVINTKASYEPLKGVMVEVGVNNLLDRDYELAEGYP HHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHHCCCCHHHCCCC EPGRTFFVQARYKW CCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]