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The map label for this gene is exbD [H]

Identifier: 118579890

GI number: 118579890

Start: 1566554

End: 1566934

Strand: Direct

Name: exbD [H]

Synonym: Ppro_1466

Alternate gene names: 118579890

Gene position: 1566554-1566934 (Clockwise)

Preceding gene: 118579889

Following gene: 118579891

Centisome position: 39.09

GC content: 59.58

Gene sequence:

>381_bases
ATGGAAGAAAAGGAATTTGACTACATCAACATCATCCCGTTCGTGGACATCATGCTGGTGCTCCTGACCATCGTGCTGAC
CACCTCCACCTTCATCGCCAGCGGCGGCATCCCGGTCAATCTCCCCAAGGCCTCGCGCAGCAATCAGGAGGTCATCAAGA
CCAGGACCATCCAGGTGGACGTGAACGGTACCGTCATCTTCGACGGCCATATCCTGACCATGCCTGCGCTGGCTACGGTC
TTGCGGCCGCTTGACCGGGCCACCCCCTTCCTGATCAGGGCCGACCGGGACATCTCCCTGCAGGGATTCGTGGATGTGCT
GGACACGGTCAAGAGCTGCGGTTTCAGCCGGGTCAGCCTACAGACCGAGAGTCGGCAATGA

Upstream 100 bases:

>100_bases
GCCACCGCGGCCGGGCTGTGCGTGGCCATCCCCTCCACGGTCCTCTACAACCTGCTGCTGCGGCGGGTCAAGGTGCTCAT
GTTCAGATGGGAGATCATGA

Downstream 100 bases:

>100_bases
ACAGACAGCGGAAGTCTCTCTGCTTGTCGCTCCTGATCCATGGCGCGCTGCTCTCCTCCCTCTATGCGGTGAGCAGTTCC
TCGGCCTGGCAGAGCGCTCC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MEEKEFDYINIIPFVDIMLVLLTIVLTTSTFIASGGIPVNLPKASRSNQEVIKTRTIQVDVNGTVIFDGHILTMPALATV
LRPLDRATPFLIRADRDISLQGFVDVLDTVKSCGFSRVSLQTESRQ

Sequences:

>Translated_126_residues
MEEKEFDYINIIPFVDIMLVLLTIVLTTSTFIASGGIPVNLPKASRSNQEVIKTRTIQVDVNGTVIFDGHILTMPALATV
LRPLDRATPFLIRADRDISLQGFVDVLDTVKSCGFSRVSLQTESRQ
>Mature_126_residues
MEEKEFDYINIIPFVDIMLVLLTIVLTTSTFIASGGIPVNLPKASRSNQEVIKTRTIQVDVNGTVIFDGHILTMPALATV
LRPLDRATPFLIRADRDISLQGFVDVLDTVKSCGFSRVSLQTESRQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 13965; Mature: 13965

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKEFDYINIIPFVDIMLVLLTIVLTTSTFIASGGIPVNLPKASRSNQEVIKTRTIQVD
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEEEEE
VNGTVIFDGHILTMPALATVLRPLDRATPFLIRADRDISLQGFVDVLDTVKSCGFSRVSL
CCCEEEECCEEHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
QTESRQ
ECCCCC
>Mature Secondary Structure
MEEKEFDYINIIPFVDIMLVLLTIVLTTSTFIASGGIPVNLPKASRSNQEVIKTRTIQVD
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEEEEEEE
VNGTVIFDGHILTMPALATVLRPLDRATPFLIRADRDISLQGFVDVLDTVKSCGFSRVSL
CCCEEEECCEEHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
QTESRQ
ECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]