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The map label for this gene is yulB [H]

Identifier: 118579873

GI number: 118579873

Start: 1549557

End: 1550372

Strand: Direct

Name: yulB [H]

Synonym: Ppro_1449

Alternate gene names: 118579873

Gene position: 1549557-1550372 (Clockwise)

Preceding gene: 118579872

Following gene: 118579875

Centisome position: 38.66

GC content: 62.99

Gene sequence:

>816_bases
ATGGACATAGCCGGAAACAGTCAAACGTCCCCCCCCTACGAGAACAATAATCTGCTGCCGGCTGAGCGGCATCTGCGCAT
CCGGGAACTGCTGCGGGAGCGGGTCACCATACGGGTTACGGAATTAAGTGAAAAGCTGGGCGTGTCGGAGATGACCATCC
GCCGCGACCTGGAGGCGCTGGAGCGACAGGGGGCTCTGGAGCGCACCCATGGCGGCGCGGTGTATCGCCATGAGCGCGTG
AGCTACGAAAACGGCTATGAGAGCCGCCTGAAGGAATTTGTGGATCTGCTGGACCTGGTCGGTCGCAAGGCCGCCTCCCT
GATCGCACCCAACGATTCGATCCTGCTCCATTGCGGCACCACGGCACTGCATCTCCTGCGCTACCTGGATCCGGAGATGC
CGGTCAGGATCTACACCAACAACATCGGCGCCATCGACGAGGTGCGGGGTAAAAAGGCGGAACTTGTGCTGCTGGGGGGA
GAACTCCGGCGGGACTCCAACTCCCTGGAGGGGCCGCTGACAATGCAGATGATCCGCCAGATCCACCCCACCAGGGCCTT
TCTTGCCGCGGACGGGATCAGCATGGCTGAGGGCATTACCAGCTCCTGCTTTGCCGAGGCTGACTTTCAGCGGGCCATGA
TCGAGCAGACCAGGGGGCAGGTCGTTGTCATGGCCGGCAACGGCGCATTCGGTCGGGTTGCCGAGGTACAGGTCGCTCCC
CTGGAGCGGGCCGACATCCTGATCCTTGACCGCACCCTGCCCAGGGAACCCCTGCGCGACCTGGAGTTGCTGGGAGTCCA
GGTGCTGGTTGCCTGA

Upstream 100 bases:

>100_bases
ACAAGGCCTGAGCCGGGCCATTACCAGGGCCGGAGACGGGATACATGCCGGAGGATGAACGCTTTTATAGAAAAAATCGT
AAAGGACAGACAACGGAACC

Downstream 100 bases:

>100_bases
CAGTTGCCTTGTCGCCTGAAATGCTGCCCGTCTCCCTCTGGGCCCAGCACAGGCCGTTGAATGATCGGGGGGCGTTTTTC
GCTAGAACCCGTTTTTGAAG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MDIAGNSQTSPPYENNNLLPAERHLRIRELLRERVTIRVTELSEKLGVSEMTIRRDLEALERQGALERTHGGAVYRHERV
SYENGYESRLKEFVDLLDLVGRKAASLIAPNDSILLHCGTTALHLLRYLDPEMPVRIYTNNIGAIDEVRGKKAELVLLGG
ELRRDSNSLEGPLTMQMIRQIHPTRAFLAADGISMAEGITSSCFAEADFQRAMIEQTRGQVVVMAGNGAFGRVAEVQVAP
LERADILILDRTLPREPLRDLELLGVQVLVA

Sequences:

>Translated_271_residues
MDIAGNSQTSPPYENNNLLPAERHLRIRELLRERVTIRVTELSEKLGVSEMTIRRDLEALERQGALERTHGGAVYRHERV
SYENGYESRLKEFVDLLDLVGRKAASLIAPNDSILLHCGTTALHLLRYLDPEMPVRIYTNNIGAIDEVRGKKAELVLLGG
ELRRDSNSLEGPLTMQMIRQIHPTRAFLAADGISMAEGITSSCFAEADFQRAMIEQTRGQVVVMAGNGAFGRVAEVQVAP
LERADILILDRTLPREPLRDLELLGVQVLVA
>Mature_271_residues
MDIAGNSQTSPPYENNNLLPAERHLRIRELLRERVTIRVTELSEKLGVSEMTIRRDLEALERQGALERTHGGAVYRHERV
SYENGYESRLKEFVDLLDLVGRKAASLIAPNDSILLHCGTTALHLLRYLDPEMPVRIYTNNIGAIDEVRGKKAELVLLGG
ELRRDSNSLEGPLTMQMIRQIHPTRAFLAADGISMAEGITSSCFAEADFQRAMIEQTRGQVVVMAGNGAFGRVAEVQVAP
LERADILILDRTLPREPLRDLELLGVQVLVA

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=266, Percent_Identity=29.3233082706767, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI226510968, Length=255, Percent_Identity=30.1960784313725, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787540, Length=241, Percent_Identity=30.7053941908714, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1788069, Length=226, Percent_Identity=30.0884955752212, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789059, Length=259, Percent_Identity=28.957528957529, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1789829, Length=235, Percent_Identity=28.5106382978723, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1789170, Length=235, Percent_Identity=26.8085106382979, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787063, Length=233, Percent_Identity=26.1802575107296, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790635, Length=257, Percent_Identity=24.5136186770428, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790753, Length=265, Percent_Identity=24.9056603773585, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082344, Length=233, Percent_Identity=24.0343347639485, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30216; Mature: 30216

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIAGNSQTSPPYENNNLLPAERHLRIRELLRERVTIRVTELSEKLGVSEMTIRRDLEAL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHCCHHHHHHHHHHHH
ERQGALERTHGGAVYRHERVSYENGYESRLKEFVDLLDLVGRKAASLIAPNDSILLHCGT
HHCCCCHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECH
TALHLLRYLDPEMPVRIYTNNIGAIDEVRGKKAELVLLGGELRRDSNSLEGPLTMQMIRQ
HHHHHHHHCCCCCCEEEEECCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
IHPTRAFLAADGISMAEGITSSCFAEADFQRAMIEQTRGQVVVMAGNGAFGRVAEVQVAP
HCCHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECC
LERADILILDRTLPREPLRDLELLGVQVLVA
CCCCCEEEEECCCCCCHHHHHHHHCEEEEEC
>Mature Secondary Structure
MDIAGNSQTSPPYENNNLLPAERHLRIRELLRERVTIRVTELSEKLGVSEMTIRRDLEAL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHCCHHHHHHHHHHHH
ERQGALERTHGGAVYRHERVSYENGYESRLKEFVDLLDLVGRKAASLIAPNDSILLHCGT
HHCCCCHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEECH
TALHLLRYLDPEMPVRIYTNNIGAIDEVRGKKAELVLLGGELRRDSNSLEGPLTMQMIRQ
HHHHHHHHCCCCCCEEEEECCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
IHPTRAFLAADGISMAEGITSSCFAEADFQRAMIEQTRGQVVVMAGNGAFGRVAEVQVAP
HCCHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECC
LERADILILDRTLPREPLRDLELLGVQVLVA
CCCCCEEEEECCCCCCHHHHHHHHCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]