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The map label for this gene is yjiM [H]

Identifier: 118579707

GI number: 118579707

Start: 1339860

End: 1341101

Strand: Reverse

Name: yjiM [H]

Synonym: Ppro_1278

Alternate gene names: 118579707

Gene position: 1341101-1339860 (Counterclockwise)

Preceding gene: 118579708

Following gene: 118579706

Centisome position: 33.46

GC content: 62.16

Gene sequence:

>1242_bases
ATGAACAATGTTGTGACCCGCAGGGAAGAACTGCAGCAGCTTCGGGCCAGGGCCGACATGGCAACGGAGTATGCCGCGGA
AATGGCGGCGCTTCGTTCCCGGAAGGACTACCTGGCCGAGTACGACTATTTTCTCGACCTGCTCGGCCTGCTCCCCCATC
CGGAGCGGTTCCGGGAACGATTCAAGAAACCGCTGGTCGGCCTGACCTGCGTGCAGGCCCCCCTGGAGCTGGTGGACGCC
CTGGGCTTTCACCCCTACCGCCTCTGCGCCCATGCTTCCTCCCGACAGAGGCTGGTCTCATCCCAGCTTCCCTCATTGGC
CTGCCCCCTGCTCAAGTCGATACGGGGATCGTTCCATCTGGATGAATCGCTGGAACGGCTCTGTGACCTGACCGTCATAC
CCGGCAGCTGCGACTGGATGGCAAAACTTCCGGAGACACTTGAAGGGCGGGCACCTGGCGTACATGTCATGGAACTGCCC
CGCATCAGGGAGAGCGAACGGGGGCAGCGGCGCTGGCTTGAAGAGGTCAGAGAGCTGAAACGGGTTCTGGAAAAACGGGC
AGGGAGAAGCCTGTCACGCCAGGCGCTGCTCCGTTCCCTGGAGACCCATGCCAGGGCATGGCGCGCCTGGCATCTCCTCC
TGGATGCGCGCAGCCAAAGCCTCATATCCGCCACCTGGACCACGGTGATCAGCCATGCCTTTCTGATGGGTGATACGGAA
GGCTGGACGGATCGGGTCAACAGGCTGCTGCGGGTTCTGAGGGAACAGCCGCCCCTGTCCGGCACCCGCGTTTTCCTGGC
CGGTTCGCCGATCTTTTTTCCCAACCTCAAGGTTCCGCAGCTGATCGAAGAGGCCGGCATGCACATCGCCGGAGACGAGC
TCTGCTCATCGGAGAGGATTCTGGCGGGTCCGGCCCTGGGCAGGGACCGTTCCGTGGATGGGCTTTTGCGCAGCCTGGCG
GAACAGTACCATCTGGGCTGCAGCTGCCCCAGTTTTACGGACACCCCCCGGCGTCTGGCCAACCTGCTGGAAACCCTGCA
TCAGCGCCGGATTTCCGGCGTGATCTACCATGTGCTCAAGGGGTGCCATCCCTACGACATGGACAGTTATCGCTACGAAA
AGATCATCAAGGAGCGGGGCTTCTCCTTTATCCGCATCGAAACCGACCTGTCCCGGGAGGACGGCAAGAACCTGTTGGTG
CGCCTGGAGGCGTTCCGCGACCTGCTGCATGAAAGGAGTTGA

Upstream 100 bases:

>100_bases
GTGCCCATGACGGGTCACTTTCGTTCCACTGGCTGAAGTGGCGCATCTTCGCATCGTCCGCCGTCGGTGCGGCCCGCAGA
TTCAGGAAAGGTTTGTTTTC

Downstream 100 bases:

>100_bases
ATCATGATTACCATGGGGTTTGATCTGGGGTCCGCCGCCATCAAGGCGGTCATGGCTGAAGAGGGCCAGGCGGTCTGGTA
CGGCACGATGCCGGCCACGG

Product: 2-hydroxyglutaryl-CoA dehydratase, D-component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MNNVVTRREELQQLRARADMATEYAAEMAALRSRKDYLAEYDYFLDLLGLLPHPERFRERFKKPLVGLTCVQAPLELVDA
LGFHPYRLCAHASSRQRLVSSQLPSLACPLLKSIRGSFHLDESLERLCDLTVIPGSCDWMAKLPETLEGRAPGVHVMELP
RIRESERGQRRWLEEVRELKRVLEKRAGRSLSRQALLRSLETHARAWRAWHLLLDARSQSLISATWTTVISHAFLMGDTE
GWTDRVNRLLRVLREQPPLSGTRVFLAGSPIFFPNLKVPQLIEEAGMHIAGDELCSSERILAGPALGRDRSVDGLLRSLA
EQYHLGCSCPSFTDTPRRLANLLETLHQRRISGVIYHVLKGCHPYDMDSYRYEKIIKERGFSFIRIETDLSREDGKNLLV
RLEAFRDLLHERS

Sequences:

>Translated_413_residues
MNNVVTRREELQQLRARADMATEYAAEMAALRSRKDYLAEYDYFLDLLGLLPHPERFRERFKKPLVGLTCVQAPLELVDA
LGFHPYRLCAHASSRQRLVSSQLPSLACPLLKSIRGSFHLDESLERLCDLTVIPGSCDWMAKLPETLEGRAPGVHVMELP
RIRESERGQRRWLEEVRELKRVLEKRAGRSLSRQALLRSLETHARAWRAWHLLLDARSQSLISATWTTVISHAFLMGDTE
GWTDRVNRLLRVLREQPPLSGTRVFLAGSPIFFPNLKVPQLIEEAGMHIAGDELCSSERILAGPALGRDRSVDGLLRSLA
EQYHLGCSCPSFTDTPRRLANLLETLHQRRISGVIYHVLKGCHPYDMDSYRYEKIIKERGFSFIRIETDLSREDGKNLLV
RLEAFRDLLHERS
>Mature_413_residues
MNNVVTRREELQQLRARADMATEYAAEMAALRSRKDYLAEYDYFLDLLGLLPHPERFRERFKKPLVGLTCVQAPLELVDA
LGFHPYRLCAHASSRQRLVSSQLPSLACPLLKSIRGSFHLDESLERLCDLTVIPGSCDWMAKLPETLEGRAPGVHVMELP
RIRESERGQRRWLEEVRELKRVLEKRAGRSLSRQALLRSLETHARAWRAWHLLLDARSQSLISATWTTVISHAFLMGDTE
GWTDRVNRLLRVLREQPPLSGTRVFLAGSPIFFPNLKVPQLIEEAGMHIAGDELCSSERILAGPALGRDRSVDGLLRSLA
EQYHLGCSCPSFTDTPRRLANLLETLHQRRISGVIYHVLKGCHPYDMDSYRYEKIIKERGFSFIRIETDLSREDGKNLLV
RLEAFRDLLHERS

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0007 [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=361, Percent_Identity=27.7008310249307, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 47381; Mature: 47381

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNVVTRREELQQLRARADMATEYAAEMAALRSRKDYLAEYDYFLDLLGLLPHPERFRER
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FKKPLVGLTCVQAPLELVDALGFHPYRLCAHASSRQRLVSSQLPSLACPLLKSIRGSFHL
HHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHCCCCCH
DESLERLCDLTVIPGSCDWMAKLPETLEGRAPGVHVMELPRIRESERGQRRWLEEVRELK
HHHHHHHHCCCCCCCCCHHHHHCCHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH
RVLEKRAGRSLSRQALLRSLETHARAWRAWHLLLDARSQSLISATWTTVISHAFLMGDTE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GWTDRVNRLLRVLREQPPLSGTRVFLAGSPIFFPNLKVPQLIEEAGMHIAGDELCSSERI
CHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCCHHHHHHHCCCEECCHHHHCCCCE
LAGPALGRDRSVDGLLRSLAEQYHLGCSCPSFTDTPRRLANLLETLHQRRISGVIYHVLK
EECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GCHPYDMDSYRYEKIIKERGFSFIRIETDLSREDGKNLLVRLEAFRDLLHERS
CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNVVTRREELQQLRARADMATEYAAEMAALRSRKDYLAEYDYFLDLLGLLPHPERFRER
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FKKPLVGLTCVQAPLELVDALGFHPYRLCAHASSRQRLVSSQLPSLACPLLKSIRGSFHL
HHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHCCCCCH
DESLERLCDLTVIPGSCDWMAKLPETLEGRAPGVHVMELPRIRESERGQRRWLEEVRELK
HHHHHHHHCCCCCCCCCHHHHHCCHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH
RVLEKRAGRSLSRQALLRSLETHARAWRAWHLLLDARSQSLISATWTTVISHAFLMGDTE
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GWTDRVNRLLRVLREQPPLSGTRVFLAGSPIFFPNLKVPQLIEEAGMHIAGDELCSSERI
CHHHHHHHHHHHHHHCCCCCCCEEEEECCCEECCCCCHHHHHHHCCCEECCHHHHCCCCE
LAGPALGRDRSVDGLLRSLAEQYHLGCSCPSFTDTPRRLANLLETLHQRRISGVIYHVLK
EECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GCHPYDMDSYRYEKIIKERGFSFIRIETDLSREDGKNLLVRLEAFRDLLHERS
CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]