Click here to switch to the map view.

The map label for this gene is exbD [H]

Identifier: 118579678

GI number: 118579678

Start: 1306802

End: 1307179

Strand: Direct

Name: exbD [H]

Synonym: Ppro_1249

Alternate gene names: 118579678

Gene position: 1306802-1307179 (Clockwise)

Preceding gene: 118579677

Following gene: 118579679

Centisome position: 32.6

GC content: 61.11

Gene sequence:

>378_bases
ATGGAAGAGAAGGAAGTCAGCTACATTAACGTCATCCCCTTCGTGGACATCATGCTGGTTCTTCTGACCATCGTGCTGAC
CACGTCCACCTTCATCGCCACCGGAGGCATTGCGGTGCAGCTCCCCAAGGCATCGGCCCGTTCCGCGGAGACGGCCCGGG
TCCAGACCATCGAGATCGACAAGAGCGGCGCCATCTTCTTCAAGGGGGCGCGCACGACCCTGGAGGGACTGCGGGCAACC
CTGCTCCCCCTGGACCGTGCAACTCCCTTCATCATCAGGGCGGATCGGGAGCTGGCGTTGCAGGATTTCGTGGATGTGTT
GGACATGGTCAAGGCAAGCGGTTTCGCCAAGGCAAGCCTGCAGACGGAACGCAGGTGA

Upstream 100 bases:

>100_bases
GCCACCGCGGTCGGCCTGTTCGTGGCCATACCCTCCGTCACCCTCTACAACCTGCTGTTGCGGAGGACCAAGGTCCTCCT
GATCCAATGGGAGCTCGCGC

Downstream 100 bases:

>100_bases
TTCCGGTCCCGAGGACGCTTTTTATCGGGGATACTTCGTATCTCGTCAGGGATTCACGATAGTTCTCCCATTCAATTAAC
CCAATGCGGAAAAGGATTAC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MEEKEVSYINVIPFVDIMLVLLTIVLTTSTFIATGGIAVQLPKASARSAETARVQTIEIDKSGAIFFKGARTTLEGLRAT
LLPLDRATPFIIRADRELALQDFVDVLDMVKASGFAKASLQTERR

Sequences:

>Translated_125_residues
MEEKEVSYINVIPFVDIMLVLLTIVLTTSTFIATGGIAVQLPKASARSAETARVQTIEIDKSGAIFFKGARTTLEGLRAT
LLPLDRATPFIIRADRELALQDFVDVLDMVKASGFAKASLQTERR
>Mature_125_residues
MEEKEVSYINVIPFVDIMLVLLTIVLTTSTFIATGGIAVQLPKASARSAETARVQTIEIDKSGAIFFKGARTTLEGLRAT
LLPLDRATPFIIRADRELALQDFVDVLDMVKASGFAKASLQTERR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 13685; Mature: 13685

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKEVSYINVIPFVDIMLVLLTIVLTTSTFIATGGIAVQLPKASARSAETARVQTIEID
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCEEEEEEEEC
KSGAIFFKGARTTLEGLRATLLPLDRATPFIIRADRELALQDFVDVLDMVKASGFAKASL
CCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCC
QTERR
CCCCC
>Mature Secondary Structure
MEEKEVSYINVIPFVDIMLVLLTIVLTTSTFIATGGIAVQLPKASARSAETARVQTIEID
CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCEEEEEEEEC
KSGAIFFKGARTTLEGLRATLLPLDRATPFIIRADRELALQDFVDVLDMVKASGFAKASL
CCCEEEEECCHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCC
QTERR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]