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The map label for this gene is yvrC [H]

Identifier: 118579642

GI number: 118579642

Start: 1266385

End: 1267344

Strand: Direct

Name: yvrC [H]

Synonym: Ppro_1213

Alternate gene names: 118579642

Gene position: 1266385-1267344 (Clockwise)

Preceding gene: 118579641

Following gene: 118579643

Centisome position: 31.6

GC content: 55.52

Gene sequence:

>960_bases
GTGAATCACGGTCAGAAAGCGGTTCCCCCCCTTGATATGCACAGGTTGATCACAGAGCTGAGCCATGTCAGGGGCAAAAC
CCAGGCTGAAGGCGCATGGCCCCGAAAAATACGCTACAGCTTTGATGTGCATGACTTGAAGACGGATACGTTCCGGCAGG
AGACAAAAAGCTTTGAGATTCAGAAGAAGCCGCTGCGCATAATACCCCATGCGGTGGGCGTCGCCGAGATCTTGTGGGCA
ATCTGCCCGCGCGAGCGCTTGATTGCCTTTAATGATCTTACCGCTGATCCGGACTCGAGCTTTATAGCCGACAAGGCACG
GCAGCAGGGCCCAATCTTCAGATCAAAACAGACGGAACTGGTGATCGGCTACCGCCCGGATCTGGTCTTTACGGTGTTTT
ATTCCGGTGCTGATTTCAAGGAAAAGCTCAGCCAGGCACAGATTCCCAGCTTTGAACTCGGGCATTTCGGGTCGATCGAG
TCGGTACAGCGGCAGATTCTGCTCATAGGAGACGTCATCGGTGAGGAGGGCAATGCCCGTGCTCTGGTGAATCTCATGAA
TGAGAGGATCCGGGACCTTAAGGCCCGGACCCCCCACAGAGATCACCCGATCCGCGTTCTGTATTATGACGAGGGGGGCT
ATGTTCCCGGCAGATTTTCAAATTTCAACTCGATCTGCGACATGATCGGTGCCGTCAATGTGGGGACTGAGCAGGGCATT
GCATCCTGGTCGCGGATCGACTACGAAACCCTGCTCAAGTGGAACCCGGACGTCATTATCGTTCCCGATCGCAGCAAGCT
GAAGGAACTGCTTGTGTCGAATCGTCTGCTGTCCCACGCCAGGGCCATACGGAGCAACTCCGTGTATGACGTCCCCGGCG
TGTATCTGCGGGCTTCATCCCAATACATGCTTCTCAGCGCCGATCTGATCGCGGGGATCATCTACCGGCAGCCCCGCTAA

Upstream 100 bases:

>100_bases
CGTTCCTAAGAGCATCGAAACATCCGCCATGCGAAGCTGTCGGATACTCAGCGCACTTCTCGCGTTCTGCTGTCTGGTTG
CCTGTGCCCCCCCGTCCGGG

Downstream 100 bases:

>100_bases
TCCGTCATGGTGAAAAAGGACTATTTCATAATCGCACTCCTGATGGCCCTGGTTGTTGCCGGTGGTCTGCTCTCCCTCTC
GTCGGGCTCATGGTCGATTC

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MNHGQKAVPPLDMHRLITELSHVRGKTQAEGAWPRKIRYSFDVHDLKTDTFRQETKSFEIQKKPLRIIPHAVGVAEILWA
ICPRERLIAFNDLTADPDSSFIADKARQQGPIFRSKQTELVIGYRPDLVFTVFYSGADFKEKLSQAQIPSFELGHFGSIE
SVQRQILLIGDVIGEEGNARALVNLMNERIRDLKARTPHRDHPIRVLYYDEGGYVPGRFSNFNSICDMIGAVNVGTEQGI
ASWSRIDYETLLKWNPDVIIVPDRSKLKELLVSNRLLSHARAIRSNSVYDVPGVYLRASSQYMLLSADLIAGIIYRQPR

Sequences:

>Translated_319_residues
MNHGQKAVPPLDMHRLITELSHVRGKTQAEGAWPRKIRYSFDVHDLKTDTFRQETKSFEIQKKPLRIIPHAVGVAEILWA
ICPRERLIAFNDLTADPDSSFIADKARQQGPIFRSKQTELVIGYRPDLVFTVFYSGADFKEKLSQAQIPSFELGHFGSIE
SVQRQILLIGDVIGEEGNARALVNLMNERIRDLKARTPHRDHPIRVLYYDEGGYVPGRFSNFNSICDMIGAVNVGTEQGI
ASWSRIDYETLLKWNPDVIIVPDRSKLKELLVSNRLLSHARAIRSNSVYDVPGVYLRASSQYMLLSADLIAGIIYRQPR
>Mature_319_residues
MNHGQKAVPPLDMHRLITELSHVRGKTQAEGAWPRKIRYSFDVHDLKTDTFRQETKSFEIQKKPLRIIPHAVGVAEILWA
ICPRERLIAFNDLTADPDSSFIADKARQQGPIFRSKQTELVIGYRPDLVFTVFYSGADFKEKLSQAQIPSFELGHFGSIE
SVQRQILLIGDVIGEEGNARALVNLMNERIRDLKARTPHRDHPIRVLYYDEGGYVPGRFSNFNSICDMIGAVNVGTEQGI
ASWSRIDYETLLKWNPDVIIVPDRSKLKELLVSNRLLSHARAIRSNSVYDVPGVYLRASSQYMLLSADLIAGIIYRQPR

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36256; Mature: 36256

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHGQKAVPPLDMHRLITELSHVRGKTQAEGAWPRKIRYSFDVHDLKTDTFRQETKSFEI
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHCCCC
QKKPLRIIPHAVGVAEILWAICPRERLIAFNDLTADPDSSFIADKARQQGPIFRSKQTEL
CCCCHHHCCHHHHHHHHHHHHCCHHHEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEE
VIGYRPDLVFTVFYSGADFKEKLSQAQIPSFELGHFGSIESVQRQILLIGDVIGEEGNAR
EEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHEEEEHHHCCCCCHH
ALVNLMNERIRDLKARTPHRDHPIRVLYYDEGGYVPGRFSNFNSICDMIGAVNVGTEQGI
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
ASWSRIDYETLLKWNPDVIIVPDRSKLKELLVSNRLLSHARAIRSNSVYDVPGVYLRASS
HHHHHCCHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
QYMLLSADLIAGIIYRQPR
CEEEEEHHHHHHHHHCCCC
>Mature Secondary Structure
MNHGQKAVPPLDMHRLITELSHVRGKTQAEGAWPRKIRYSFDVHDLKTDTFRQETKSFEI
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHCCCC
QKKPLRIIPHAVGVAEILWAICPRERLIAFNDLTADPDSSFIADKARQQGPIFRSKQTEL
CCCCHHHCCHHHHHHHHHHHHCCHHHEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEE
VIGYRPDLVFTVFYSGADFKEKLSQAQIPSFELGHFGSIESVQRQILLIGDVIGEEGNAR
EEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHEEEEHHHCCCCCHH
ALVNLMNERIRDLKARTPHRDHPIRVLYYDEGGYVPGRFSNFNSICDMIGAVNVGTEQGI
HHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCHHHH
ASWSRIDYETLLKWNPDVIIVPDRSKLKELLVSNRLLSHARAIRSNSVYDVPGVYLRASS
HHHHHCCHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
QYMLLSADLIAGIIYRQPR
CEEEEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]