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The map label for this gene is yvoA [H]

Identifier: 118579625

GI number: 118579625

Start: 1248393

End: 1249139

Strand: Direct

Name: yvoA [H]

Synonym: Ppro_1196

Alternate gene names: 118579625

Gene position: 1248393-1249139 (Clockwise)

Preceding gene: 118579624

Following gene: 118579626

Centisome position: 31.15

GC content: 59.84

Gene sequence:

>747_bases
ATGCTGGACCCGGAAAACCGTATGCCCTTGTATCACCAGGTCGAAAGCCATCTCAAGGAGAATATCGGCAACGGCACGTG
GAAGGCCGGAGAGGCGATTCCTCCCGAACGGATGCTTGTGGATCAGTACGGGGTCAGCAGGATCACGATTCGCCAGGCCC
TTGCAAATCTCGTGGCCGCTGGTCTGCTCTACCGGAAGCATGGTAAAGGAACGTTTGTCGCCGGCGCGCAGGATCGCCCC
ATAACCGAATCCCTTGCCAATCTGACCGGGCACCTGGAAGAGTTGCAGTTGCGCGGACTTAATCCTCAGGTTCGGGTGCT
GGCGCTGGAGACCAGGACGCTGGCTGCCGAGGTGGCGGAGGCCCTGGAACGGAGTCCTGCCGCCCCGGGGTGGTATCTCT
ACCGCCTGGTTACTGTGGATCGGCAGCCGCTCATGCTTTCCACCGTGTGGTTGCCCCGCGACCTGGAAATAGAGCTGACC
GAAGACATTTTGAAGCAGCACGGCATGGCGCTGCTGCTGACGCGTAACGGAATCTTCCCCCTTCGTGGCAGGCAGCGGAT
CGGAGCCTCAAGCGCTGGCCCGGAGGAGGCGCAACTGCTGGGGATTCGACCGGGTGATGCGGTGCTCTGTGTCAAGAGGG
TTATCTACGGTGCCGCGAGTCGTCCGCTGGTTTGGTTCAGAACGCTCTATCGCTCTGATCGCTATGAATACGAAGTAGAA
CTTAAGAGAGGTCGTTCACAGGCATGA

Upstream 100 bases:

>100_bases
CAATTTGCCGGACGTGACCGCAGGTGGTTCAGGCTTGTCTTTGGGGAGTGTAGATGTTATGTTGTCATGACATCTTAACC
TTGAGATCCCAGGGGGGAAT

Downstream 100 bases:

>100_bases
TTACTACTACGCTGGAAATTTTTCTGATCGCCATCGCAGCCGGCGTTGTCGGTTCCATCCTGGGTCTGGGGGGGGGAATC
ATCATTGTGCCGGCCCTTAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MLDPENRMPLYHQVESHLKENIGNGTWKAGEAIPPERMLVDQYGVSRITIRQALANLVAAGLLYRKHGKGTFVAGAQDRP
ITESLANLTGHLEELQLRGLNPQVRVLALETRTLAAEVAEALERSPAAPGWYLYRLVTVDRQPLMLSTVWLPRDLEIELT
EDILKQHGMALLLTRNGIFPLRGRQRIGASSAGPEEAQLLGIRPGDAVLCVKRVIYGAASRPLVWFRTLYRSDRYEYEVE
LKRGRSQA

Sequences:

>Translated_248_residues
MLDPENRMPLYHQVESHLKENIGNGTWKAGEAIPPERMLVDQYGVSRITIRQALANLVAAGLLYRKHGKGTFVAGAQDRP
ITESLANLTGHLEELQLRGLNPQVRVLALETRTLAAEVAEALERSPAAPGWYLYRLVTVDRQPLMLSTVWLPRDLEIELT
EDILKQHGMALLLTRNGIFPLRGRQRIGASSAGPEEAQLLGIRPGDAVLCVKRVIYGAASRPLVWFRTLYRSDRYEYEVE
LKRGRSQA
>Mature_248_residues
MLDPENRMPLYHQVESHLKENIGNGTWKAGEAIPPERMLVDQYGVSRITIRQALANLVAAGLLYRKHGKGTFVAGAQDRP
ITESLANLTGHLEELQLRGLNPQVRVLALETRTLAAEVAEALERSPAAPGWYLYRLVTVDRQPLMLSTVWLPRDLEIELT
EDILKQHGMALLLTRNGIFPLRGRQRIGASSAGPEEAQLLGIRPGDAVLCVKRVIYGAASRPLVWFRTLYRSDRYEYEVE
LKRGRSQA

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=235, Percent_Identity=27.6595744680851, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786950, Length=238, Percent_Identity=26.4705882352941, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788418, Length=237, Percent_Identity=27.0042194092827, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790118, Length=158, Percent_Identity=27.8481012658228, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27827; Mature: 27827

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDPENRMPLYHQVESHLKENIGNGTWKAGEAIPPERMLVDQYGVSRITIRQALANLVAA
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
GLLYRKHGKGTFVAGAQDRPITESLANLTGHLEELQLRGLNPQVRVLALETRTLAAEVAE
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHH
ALERSPAAPGWYLYRLVTVDRQPLMLSTVWLPRDLEIELTEDILKQHGMALLLTRNGIFP
HHHHCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCEEHHHHHHHHCCEEEEEECCCCCC
LRGRQRIGASSAGPEEAQLLGIRPGDAVLCVKRVIYGAASRPLVWFRTLYRSDRYEYEVE
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEE
LKRGRSQA
ECCCCCCC
>Mature Secondary Structure
MLDPENRMPLYHQVESHLKENIGNGTWKAGEAIPPERMLVDQYGVSRITIRQALANLVAA
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
GLLYRKHGKGTFVAGAQDRPITESLANLTGHLEELQLRGLNPQVRVLALETRTLAAEVAE
HHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHH
ALERSPAAPGWYLYRLVTVDRQPLMLSTVWLPRDLEIELTEDILKQHGMALLLTRNGIFP
HHHHCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCEEHHHHHHHHCCEEEEEECCCCCC
LRGRQRIGASSAGPEEAQLLGIRPGDAVLCVKRVIYGAASRPLVWFRTLYRSDRYEYEVE
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEE
LKRGRSQA
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]