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The map label for this gene is yraN [C]

Identifier: 118579616

GI number: 118579616

Start: 1237938

End: 1238360

Strand: Reverse

Name: yraN [C]

Synonym: Ppro_1186

Alternate gene names: 118579616

Gene position: 1238360-1237938 (Counterclockwise)

Preceding gene: 118579617

Following gene: 118579615

Centisome position: 30.9

GC content: 64.54

Gene sequence:

>423_bases
ATGAAGCGGCCCGGGGACGGGCGCCAGGAGTCCCCTTCCTCCACGGCGCGGCCGGACAACAGGAACACCGGTAGCAGGGG
CGAGGAGATCGCAACCTCCTTCCTCGGCCAGCAGGGCTACCGAATCCTGGAGCGTAACTTCCGCTGCAAGGGGGGAGAAC
TGGACATCGTGGCCCGCGCGCCGGGGGAGAGGAGCCTGGTATTCGTGGAGGTCAAAACCCGCCGCGACCGTTCCTACGGA
CCGCCCCAACTGGCGGTGACCCCCTTCAAACAGCGCCAGATATCCAAGGCCGCCCTGACCTGGCTCTCCAGGAACCATCT
CCACGACAGCCAGGCGCGCTTCGACGTGATCGCCATCCTGCTGGAAGATGGCGGGCGCCACTCCATCGAACATATCGTCA
ACGCCTTTGAGCTTGCATATTGA

Upstream 100 bases:

>100_bases
GTTGCTGGGGGTACGGCGCCCCGGAAGAACTGCGGCAGGCCGACTACCGGGCAGACTCCTGCAGCGACGTTTCCCGGATC
ATCCTGACCGGAAAGTCGCC

Downstream 100 bases:

>100_bases
TGAGCTTGACGGCCAGCGAGCATCCATCACGACAGACACTTACCCCTCCATCGACGACGCCCGCCCTCACGGGAACGAAA
CGCCGTAACGACGGGGGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MKRPGDGRQESPSSTARPDNRNTGSRGEEIATSFLGQQGYRILERNFRCKGGELDIVARAPGERSLVFVEVKTRRDRSYG
PPQLAVTPFKQRQISKAALTWLSRNHLHDSQARFDVIAILLEDGGRHSIEHIVNAFELAY

Sequences:

>Translated_140_residues
MKRPGDGRQESPSSTARPDNRNTGSRGEEIATSFLGQQGYRILERNFRCKGGELDIVARAPGERSLVFVEVKTRRDRSYG
PPQLAVTPFKQRQISKAALTWLSRNHLHDSQARFDVIAILLEDGGRHSIEHIVNAFELAY
>Mature_140_residues
MKRPGDGRQESPSSTARPDNRNTGSRGEEIATSFLGQQGYRILERNFRCKGGELDIVARAPGERSLVFVEVKTRRDRSYG
PPQLAVTPFKQRQISKAALTWLSRNHLHDSQARFDVIAILLEDGGRHSIEHIVNAFELAY

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=130, Percent_Identity=31.5384615384615, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1186_PELPD (A1AN88)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_900866.1
- ProteinModelPortal:   A1AN88
- STRING:   A1AN88
- GeneID:   4574657
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_1186
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   KQRQISK
- PhylomeDB:   A1AN88
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 15775; Mature: 15775

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRPGDGRQESPSSTARPDNRNTGSRGEEIATSFLGQQGYRILERNFRCKGGELDIVARA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEEEC
PGERSLVFVEVKTRRDRSYGPPQLAVTPFKQRQISKAALTWLSRNHLHDSQARFDVIAIL
CCCCCEEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEE
LEDGGRHSIEHIVNAFELAY
ECCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRPGDGRQESPSSTARPDNRNTGSRGEEIATSFLGQQGYRILERNFRCKGGELDIVARA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEEEC
PGERSLVFVEVKTRRDRSYGPPQLAVTPFKQRQISKAALTWLSRNHLHDSQARFDVIAIL
CCCCCEEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEE
LEDGGRHSIEHIVNAFELAY
ECCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA