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The map label for this gene is ytfH [C]

Identifier: 118579542

GI number: 118579542

Start: 1154973

End: 1155323

Strand: Reverse

Name: ytfH [C]

Synonym: Ppro_1109

Alternate gene names: 118579542

Gene position: 1155323-1154973 (Counterclockwise)

Preceding gene: 118579544

Following gene: 118579539

Centisome position: 28.83

GC content: 53.85

Gene sequence:

>351_bases
GTGAGAGATCCGGACATTCGTTGTGGCGTTGAAGTTACCCTGGCGGTCATGGGAGGCAAATGGAAGGGGCTGGTGCTCTG
GCATCTGCGACTCAAAACCCTTCGCTTCGCTCAGTTGCAGCGACGTCTGAGGACAGTTACCCAGAAGATGCTGACACAGC
AGCTGCGCGAACTTGAAGCGAACGGACTTATCCACCGGCAAATATACGCCGAGGTCCCGCCGCGCGTCGAATACTCCTTA
ACCGATGAGGGACGAAGAGTTGTTCCGATACTGGAATTGATGTGCCAGTGGGGTCAGGATTATCTACAGAAGACAGAGGG
TGTCACCCTAAGTTGCACTAATGAACAGTGA

Upstream 100 bases:

>100_bases
ATTTTAACAAACTAGGTGAATATGGTATTATACGCAAGTACAGACAAATTAGTAATGTAGTAACCAAATAGATACTATGC
TGATTACAAAGGGGTTTATG

Downstream 100 bases:

>100_bases
ACAGACCGGAGGGTCAGCACTTACAGAGTGGAATGACCTGAAAACACGATTCCCAACCAGTCGGTTGCACGCCGCCCCGC
CCGGAAAACCGACCGGGCAA

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MRDPDIRCGVEVTLAVMGGKWKGLVLWHLRLKTLRFAQLQRRLRTVTQKMLTQQLRELEANGLIHRQIYAEVPPRVEYSL
TDEGRRVVPILELMCQWGQDYLQKTEGVTLSCTNEQ

Sequences:

>Translated_116_residues
MRDPDIRCGVEVTLAVMGGKWKGLVLWHLRLKTLRFAQLQRRLRTVTQKMLTQQLRELEANGLIHRQIYAEVPPRVEYSL
TDEGRRVVPILELMCQWGQDYLQKTEGVTLSCTNEQ
>Mature_116_residues
MRDPDIRCGVEVTLAVMGGKWKGLVLWHLRLKTLRFAQLQRRLRTVTQKMLTQQLRELEANGLIHRQIYAEVPPRVEYSL
TDEGRRVVPILELMCQWGQDYLQKTEGVTLSCTNEQ

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=91, Percent_Identity=38.4615384615385, Blast_Score=66, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13550; Mature: 13550

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPDIRCGVEVTLAVMGGKWKGLVLWHLRLKTLRFAQLQRRLRTVTQKMLTQQLRELEA
CCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGLIHRQIYAEVPPRVEYSLTDEGRRVVPILELMCQWGQDYLQKTEGVTLSCTNEQ
CCCCHHHHHHCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEECCCC
>Mature Secondary Structure
MRDPDIRCGVEVTLAVMGGKWKGLVLWHLRLKTLRFAQLQRRLRTVTQKMLTQQLRELEA
CCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NGLIHRQIYAEVPPRVEYSLTDEGRRVVPILELMCQWGQDYLQKTEGVTLSCTNEQ
CCCCHHHHHHCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]