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The map label for this gene is ybfF [C]

Identifier: 118579470

GI number: 118579470

Start: 1086847

End: 1087527

Strand: Direct

Name: ybfF [C]

Synonym: Ppro_1037

Alternate gene names: 118579470

Gene position: 1086847-1087527 (Clockwise)

Preceding gene: 118579469

Following gene: 118579471

Centisome position: 27.12

GC content: 61.82

Gene sequence:

>681_bases
ATGGCCAGGTGGCTTGCCGGTCGCTACCGCGTGTTTAGCCTGGACCTGCGCAACCATGGCCGATCTCCCCACTGTGACCG
CATGGACTATCCGGCCATGGCTGAGGATCTGCGACAGTTCATGGAACAGCATTCCCTTGGACGGACGATCCTGCTGGGGC
ATTCCATGGGGGGCAAGGTCGCCATGCGCTTTGCCCTTGCCTGGCCGGAGATGGTGGAGAAACTGGTGGTGGTGGACATC
GCCCCCAAGCCGTACGGGGCCCGCCACGACGACATACTCCGTGGGCTGGTGGCCCTGGAGCCGGAGCGCTTCAGGGAGCG
GGAGGATATTGATCTGGTTCTTCAGGCCTCCATTCCCGATCCGGACATGCGCCTGTTTCTGTTGAAGAATCTGGTTCGCA
CCCCCCGAGGTAGCTTTGCCTGGAGAATCAACCTGGAGAGTATTGTACGGAATTATGACGTTATCAGCGGCTGGCCGGTC
GATGTCGCAAGCTGTGGCGTATCAGCCCTGTTCATGAAGGGGGAATGCTCCGACTACCTGCGGGTTGCGGACGCTGGGCT
GGTCAGGGATTCATTTCCCCGCGCGCGGTTGGTGACCATCTCACACGCCGGGCATTGGCCGCATGTGGAAGCGCCCGGAG
TGTTCCGGGCTGCCCTGGATGGTTTCCTGGCAGCGGCCTGA

Upstream 100 bases:

>100_bases
CGGGCGTGAAGCCGTGCAACTGCACCATGAGATCCATGGATCAGGTCCGCCCCTGATCATCCTCCACGGCCTGCTCGGTT
CGGGGGACAACTGGCGCACC

Downstream 100 bases:

>100_bases
GCCTGTTTCGGTGTATGAAATCAGAAAGGAGAGACAAAGCATGGGTGGAAAGATCTTGACACTTGCCGACAGTCCGGTCG
TTGGCATTCTGGCCAACCCC

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MARWLAGRYRVFSLDLRNHGRSPHCDRMDYPAMAEDLRQFMEQHSLGRTILLGHSMGGKVAMRFALAWPEMVEKLVVVDI
APKPYGARHDDILRGLVALEPERFREREDIDLVLQASIPDPDMRLFLLKNLVRTPRGSFAWRINLESIVRNYDVISGWPV
DVASCGVSALFMKGECSDYLRVADAGLVRDSFPRARLVTISHAGHWPHVEAPGVFRAALDGFLAAA

Sequences:

>Translated_226_residues
MARWLAGRYRVFSLDLRNHGRSPHCDRMDYPAMAEDLRQFMEQHSLGRTILLGHSMGGKVAMRFALAWPEMVEKLVVVDI
APKPYGARHDDILRGLVALEPERFREREDIDLVLQASIPDPDMRLFLLKNLVRTPRGSFAWRINLESIVRNYDVISGWPV
DVASCGVSALFMKGECSDYLRVADAGLVRDSFPRARLVTISHAGHWPHVEAPGVFRAALDGFLAAA
>Mature_225_residues
ARWLAGRYRVFSLDLRNHGRSPHCDRMDYPAMAEDLRQFMEQHSLGRTILLGHSMGGKVAMRFALAWPEMVEKLVVVDIA
PKPYGARHDDILRGLVALEPERFREREDIDLVLQASIPDPDMRLFLLKNLVRTPRGSFAWRINLESIVRNYDVISGWPVD
VASCGVSALFMKGECSDYLRVADAGLVRDSFPRARLVTISHAGHWPHVEAPGVFRAALDGFLAAA

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dmpD/todF/xylF esterase family [H]

Homologues:

Organism=Homo sapiens, GI23200012, Length=220, Percent_Identity=39.0909090909091, Blast_Score=141, Evalue=6e-34,
Organism=Homo sapiens, GI23200008, Length=220, Percent_Identity=39.0909090909091, Blast_Score=140, Evalue=8e-34,
Organism=Homo sapiens, GI223941839, Length=214, Percent_Identity=31.3084112149533, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1786902, Length=219, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17508535, Length=223, Percent_Identity=37.6681614349776, Blast_Score=141, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17507063, Length=222, Percent_Identity=25.2252252252252, Blast_Score=70, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6321468, Length=227, Percent_Identity=33.0396475770925, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24640348, Length=226, Percent_Identity=31.858407079646, Blast_Score=102, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24646055, Length=226, Percent_Identity=25.2212389380531, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR012908 [H]

Pfam domain/function: PF00561 Abhydrolase_1; PF07819 PGAP1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 25479; Mature: 25348

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARWLAGRYRVFSLDLRNHGRSPHCDRMDYPAMAEDLRQFMEQHSLGRTILLGHSMGGKV
CCCCCCCCEEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
AMRFALAWPEMVEKLVVVDIAPKPYGARHDDILRGLVALEPERFREREDIDLVLQASIPD
HHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCC
PDMRLFLLKNLVRTPRGSFAWRINLESIVRNYDVISGWPVDVASCGVSALFMKGECSDYL
CCHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCCCCCCCHHHHCCCEEEEECCCCHHHH
RVADAGLVRDSFPRARLVTISHAGHWPHVEAPGVFRAALDGFLAAA
HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARWLAGRYRVFSLDLRNHGRSPHCDRMDYPAMAEDLRQFMEQHSLGRTILLGHSMGGKV
CCCCCCCEEEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHH
AMRFALAWPEMVEKLVVVDIAPKPYGARHDDILRGLVALEPERFREREDIDLVLQASIPD
HHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCHHHHCCCCCCEEEEEECCCC
PDMRLFLLKNLVRTPRGSFAWRINLESIVRNYDVISGWPVDVASCGVSALFMKGECSDYL
CCHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCCCCCCCHHHHCCCEEEEECCCCHHHH
RVADAGLVRDSFPRARLVTISHAGHWPHVEAPGVFRAALDGFLAAA
HHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]