| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
Click here to switch to the map view.
The map label for this gene is rpoN [H]
Identifier: 118579410
GI number: 118579410
Start: 1016542
End: 1017981
Strand: Direct
Name: rpoN [H]
Synonym: Ppro_0974
Alternate gene names: 118579410
Gene position: 1016542-1017981 (Clockwise)
Preceding gene: 118579409
Following gene: 118579411
Centisome position: 25.36
GC content: 57.5
Gene sequence:
>1440_bases ATGGCTTTGGAGATGCGCCAACAAATAAAGATGACCCAGCAGCTGGTGATGACACCCCAGTTGCAGCAGGCCATCAAGCT GCTCCAGTTGACCCGTATCGAACTTCAGGATGTGGTGCGTCAGGAGTTGGAGGAGAATCCGCTTCTCGAAGAAGCTGGCG AGCCGGAGGAGGGGGGGGATCCCGAGTCGGTTGACGCCCCGGAAAAGGAAGCGGAACCGCCTGCGGAGACGGACGAATTC CGCGAGGTGGAAGCGGGCGATGACACCCTGCGCGACTGGGACAGTTACCTGGACGGGTATAACTACAGTTCCGGTGAGCA GTACAGCGGCGATGACGATCGCCCATCCTTCGAGAGTCTGTTGACCCGCAAGGGGACGCTGATTGATCACCTGCTCTGGC AACTGCACATGGGGCATTTCCTCCCCGATCAGGTGCGCATCGGCGAGGAGATCATCGGCAACATCGACGAGGGTGGATAT CTGCGCTCCACGATTGAGGAAATAGGGCAGGCCTGTGACGTCCCCGAAGATGATGTCCTGGCGGTGCTGAAACATATCCA GGAGTTCGATCCCACCGGTGTCGGTGCTCGGGACCTGCGCGAGTGTCTGCTGATCCAGGCCCGTTTTCTTGGCATGCAGG GCGGTGTCGTCGAACGAATCCTGCAGAACCATCTCAAGGCGCTGGAAACGCGCAACTATAAGTTGATTGCCCGCGATTTG GGAGTCGACCTGCATCAGGTGCATATCGCCGCCAAGATAATTGGCGGACTGGACCCCCGGCCAGGCAGGCTCTTCGGTTC CGATGAAACGCACTACATCTCGCCCGACATCTTCGTCTCCAAGCTGGGGGACGACTATGTGGTCATGCTCAATGAGGAAG GGCTGCCGAACCTCAAGGTCAGCCACTTCTATTCTGAAGCGCGCAGCAGCGGCTCCGTGGACTCCCGTGCCGAGGAGTAC ATCGGGGAAAAGATCCGCTCTGCCCTTTGGCTGATCAAGAGCATTCAGCAGCGCCAGCGAACCATCTACAAGGTCGCCAA AAGTATCGTCCGCTTCCAGCGCGAATTCCTCGATTACGGCATCGAATACTTGCGTCCCCTGGTGCTGCGCGATGTGGCCG ATGATATCGGCATGCACGAATCCACCATCAGCCGCGTCACCACGAACAAGTACATGCAGACCCCTCAGGGATTGTATGAA CTCAAGTACTTCTTCAACAGCGGGCTTGCCACCAGCGGTGGGGATTTCGTCGCCTCGGAGAGTGTTAAGACCCGTATTCG TGAGATAATAGAAAAGGAAGATCCGCGCAAACCGCTGTCAGACCAGAAAATTGCCGAGATGCTCATGGCTGAGAAGGTCA CTATCGCCAGGAGGACCGTAACCAAGTACCGTGAGCTGCTCAGGCTCGGTTCCTCGTCGGAGCGCAAACGACATTTCTGA
Upstream 100 bases:
>100_bases CCCCGGAGGAGATCGCGTCCAGTCGCAAGGCGCGGGAGATTTACCTGGGAGACGGATTCCGTTTGTAGGCCGGACTTTTT TTTAATAGGTACTGAACGAT
Downstream 100 bases:
>100_bases CTCTAAGGATTTCCCGGGTGCCGTAGCGGTCAACGGTCGGATGGAATTGGCGGGAGGAGTTCCCGCCGGGCCATGTCGAT CCTACCCGGTTTTTGATGAA
Product: RNA polymerase sigma-54 subunit RpoN
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MALEMRQQIKMTQQLVMTPQLQQAIKLLQLTRIELQDVVRQELEENPLLEEAGEPEEGGDPESVDAPEKEAEPPAETDEF REVEAGDDTLRDWDSYLDGYNYSSGEQYSGDDDRPSFESLLTRKGTLIDHLLWQLHMGHFLPDQVRIGEEIIGNIDEGGY LRSTIEEIGQACDVPEDDVLAVLKHIQEFDPTGVGARDLRECLLIQARFLGMQGGVVERILQNHLKALETRNYKLIARDL GVDLHQVHIAAKIIGGLDPRPGRLFGSDETHYISPDIFVSKLGDDYVVMLNEEGLPNLKVSHFYSEARSSGSVDSRAEEY IGEKIRSALWLIKSIQQRQRTIYKVAKSIVRFQREFLDYGIEYLRPLVLRDVADDIGMHESTISRVTTNKYMQTPQGLYE LKYFFNSGLATSGGDFVASESVKTRIREIIEKEDPRKPLSDQKIAEMLMAEKVTIARRTVTKYRELLRLGSSSERKRHF
Sequences:
>Translated_479_residues MALEMRQQIKMTQQLVMTPQLQQAIKLLQLTRIELQDVVRQELEENPLLEEAGEPEEGGDPESVDAPEKEAEPPAETDEF REVEAGDDTLRDWDSYLDGYNYSSGEQYSGDDDRPSFESLLTRKGTLIDHLLWQLHMGHFLPDQVRIGEEIIGNIDEGGY LRSTIEEIGQACDVPEDDVLAVLKHIQEFDPTGVGARDLRECLLIQARFLGMQGGVVERILQNHLKALETRNYKLIARDL GVDLHQVHIAAKIIGGLDPRPGRLFGSDETHYISPDIFVSKLGDDYVVMLNEEGLPNLKVSHFYSEARSSGSVDSRAEEY IGEKIRSALWLIKSIQQRQRTIYKVAKSIVRFQREFLDYGIEYLRPLVLRDVADDIGMHESTISRVTTNKYMQTPQGLYE LKYFFNSGLATSGGDFVASESVKTRIREIIEKEDPRKPLSDQKIAEMLMAEKVTIARRTVTKYRELLRLGSSSERKRHF >Mature_478_residues ALEMRQQIKMTQQLVMTPQLQQAIKLLQLTRIELQDVVRQELEENPLLEEAGEPEEGGDPESVDAPEKEAEPPAETDEFR EVEAGDDTLRDWDSYLDGYNYSSGEQYSGDDDRPSFESLLTRKGTLIDHLLWQLHMGHFLPDQVRIGEEIIGNIDEGGYL RSTIEEIGQACDVPEDDVLAVLKHIQEFDPTGVGARDLRECLLIQARFLGMQGGVVERILQNHLKALETRNYKLIARDLG VDLHQVHIAAKIIGGLDPRPGRLFGSDETHYISPDIFVSKLGDDYVVMLNEEGLPNLKVSHFYSEARSSGSVDSRAEEYI GEKIRSALWLIKSIQQRQRTIYKVAKSIVRFQREFLDYGIEYLRPLVLRDVADDIGMHESTISRVTTNKYMQTPQGLYEL KYFFNSGLATSGGDFVASESVKTRIREIIEKEDPRKPLSDQKIAEMLMAEKVTIARRTVTKYRELLRLGSSSERKRHF
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of the nitrogen fixation genes. The open complex (sigma-54 and core
COG id: COG1508
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-54 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789594, Length=482, Percent_Identity=37.9668049792531, Blast_Score=320, Evalue=2e-88,
Paralogues:
None
Copy number: 70 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000394 - InterPro: IPR007046 - InterPro: IPR007634 [H]
Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]
EC number: NA
Molecular weight: Translated: 54603; Mature: 54471
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALEMRQQIKMTQQLVMTPQLQQAIKLLQLTRIELQDVVRQELEENPLLEEAGEPEEGGD CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCC PESVDAPEKEAEPPAETDEFREVEAGDDTLRDWDSYLDGYNYSSGEQYSGDDDRPSFESL CCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH LTRKGTLIDHLLWQLHMGHFLPDQVRIGEEIIGNIDEGGYLRSTIEEIGQACDVPEDDVL HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHH AVLKHIQEFDPTGVGARDLRECLLIQARFLGMQGGVVERILQNHLKALETRNYKLIARDL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEHHHH GVDLHQVHIAAKIIGGLDPRPGRLFGSDETHYISPDIFVSKLGDDYVVMLNEEGLPNLKV CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHCCCCEEEEECCCCCCCCHH SHFYSEARSSGSVDSRAEEYIGEKIRSALWLIKSIQQRQRTIYKVAKSIVRFQREFLDYG HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEYLRPLVLRDVADDIGMHESTISRVTTNKYMQTPQGLYELKYFFNSGLATSGGDFVASE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHH SVKTRIREIIEKEDPRKPLSDQKIAEMLMAEKVTIARRTVTKYRELLRLGSSSERKRHF HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCC >Mature Secondary Structure ALEMRQQIKMTQQLVMTPQLQQAIKLLQLTRIELQDVVRQELEENPLLEEAGEPEEGGD CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCC PESVDAPEKEAEPPAETDEFREVEAGDDTLRDWDSYLDGYNYSSGEQYSGDDDRPSFESL CCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH LTRKGTLIDHLLWQLHMGHFLPDQVRIGEEIIGNIDEGGYLRSTIEEIGQACDVPEDDVL HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHH AVLKHIQEFDPTGVGARDLRECLLIQARFLGMQGGVVERILQNHLKALETRNYKLIARDL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEHHHH GVDLHQVHIAAKIIGGLDPRPGRLFGSDETHYISPDIFVSKLGDDYVVMLNEEGLPNLKV CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHCCCCEEEEECCCCCCCCHH SHFYSEARSSGSVDSRAEEYIGEKIRSALWLIKSIQQRQRTIYKVAKSIVRFQREFLDYG HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IEYLRPLVLRDVADDIGMHESTISRVTTNKYMQTPQGLYELKYFFNSGLATSGGDFVASE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHH SVKTRIREIIEKEDPRKPLSDQKIAEMLMAEKVTIARRTVTKYRELLRLGSSSERKRHF HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2198257 [H]