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The map label for this gene is pqqE [H]

Identifier: 118579348

GI number: 118579348

Start: 961997

End: 963490

Strand: Direct

Name: pqqE [H]

Synonym: Ppro_0911

Alternate gene names: 118579348

Gene position: 961997-963490 (Clockwise)

Preceding gene: 118579347

Following gene: 118579349

Centisome position: 24.0

GC content: 64.19

Gene sequence:

>1494_bases
ATGACGAACTGTCCGGACAGAATCTACGGTTCCGAATTCACCCCCCGGGAGATAGCCGATGCCGTGCGCGATGGGCGCCT
GCTCTCCATGGAGATCGAATTCAACCAGAACTGCAACTTCAGCTGCATCTACTGTTACGCCTCCCAGGCCAGCGCCAAAC
GCGACGACCTGACCAGGGATGAGTTCCTGGACATCATCGGTCAGGCTCGGGAACTGGGGGCGCGCAAGATCATCATCCTC
GGCGGCGAGCCGACCCTCTACCCCCACCTGATGGAGATGGTCCGCCATATCCGCTCCACGGGGATGGATGTGGAGCTGTT
CACCAACGGCGCCAATGTCACCCCGCAGCTGGCTCGGGAGCTGTTTGAGAACCGGGCCAGGGTCGTGCTTAAGATGAACA
CCCTGGACGAGAGCCTGCAGGACACCCTCTGCGGCCGCAAGGGGGCCCATACCCAGATCCAGGAGGCCTTCGCCAACCTG
AAGCTGGCCGGCTACCCCTCGCCTGACTGCCCCTTGGGAGTCAGCTCCATCATCTGCCAGCAGAATGTGGAGGAGCTGCC
CCGCATGTGGCAGTGGCTGCGCGACCAGGGCATCCTGCCCTATTTCGAGATGATGACCCCCCAAGGGGGCGCCCGTGAGC
ATAACATGCTGGAGCTGGACTCCCCCAGGGCGGAGGACTTCTTCAACCGCATCGCCGAGATCGACAGGACCGGCTACGGC
ATCCACTGGCAGCCCCAGCCCCCGCTGGTGGGGGGAGAGTGCCTGCGGCACCAGTACTCCTGCGCCGTCAACTCCCAGGG
CTTTGTCCAGTCCTGCGTCGGCATTACCATCCCCATCGGCGACCTGCGCAGACAGAGCCTGCGGGAGGTGCTGCGCGACA
GCGAGGTGGTGCAGGACCTGAAGAACTACCGGGACCTGATCAAGGGGCCCTGCGGCACGTGCGAGCAGCTGGACCACTGC
TACGGCTGCCGCGGCAGCGCATACCAGCTTACCGGCGATTACCTGGCCTCCGACCCGCTTTGCTGGAAGAACAGCCAGCG
TCGCGACGAGATCATGTTCCTGCCCATCGACGTGTCCCGCTTCATGCCGCACAAGCCGCCCATGCTGCTGGTGGACCGCC
TGCTGGAGATCGGGGACAGGACCTCGCTGTGCGAGATGACCGTGCGCGGGGATATGATTTTCGTGGACGAAGACGGCAGG
CTGGACGATGCCTCCTTTCCGGAGATCATCTCCCAGGCCGTGGCGGCCCAGGAGGGGTTCCGCAGGATCGCCAGCAGGAA
TCCGCTGCTGGAAGGCTTTCTGCTGGGAGTCAAGAAGCTGGAGGTCCTGGGGACGGCGCGGGTGGGGGACAGTCTGCGCA
TCTCCCTGTACAAGGCTTCCCGGTTCGGTGACTTCGGCATCCTGGAGGGTACGGTGATGAACGGCGACACGCTGATCGCC
CGCGGTGAGATCAAGGTCTGGCAGAGCGGTTCCGGGGCGGGGAGTGGCGCATGA

Upstream 100 bases:

>100_bases
GACCCCAGGTGGTCATTGCCAGCGAGGAGCAGGTCAAAAGCCGGGTCTATCCCGGCAATGCCCGCAAGATGATCCGTTTC
GTGGATACGAGAGAGAGACC

Downstream 100 bases:

>100_bases
GGGAATCCGCGGCCATGAGAAGCGTGATGCTGATGCTTGCCTGCCTGCTGCTGGCGATCCCCGTCTCCGGTTCGGGGACG
GCGCAGCCTGCGGATATGGC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MTNCPDRIYGSEFTPREIADAVRDGRLLSMEIEFNQNCNFSCIYCYASQASAKRDDLTRDEFLDIIGQARELGARKIIIL
GGEPTLYPHLMEMVRHIRSTGMDVELFTNGANVTPQLARELFENRARVVLKMNTLDESLQDTLCGRKGAHTQIQEAFANL
KLAGYPSPDCPLGVSSIICQQNVEELPRMWQWLRDQGILPYFEMMTPQGGAREHNMLELDSPRAEDFFNRIAEIDRTGYG
IHWQPQPPLVGGECLRHQYSCAVNSQGFVQSCVGITIPIGDLRRQSLREVLRDSEVVQDLKNYRDLIKGPCGTCEQLDHC
YGCRGSAYQLTGDYLASDPLCWKNSQRRDEIMFLPIDVSRFMPHKPPMLLVDRLLEIGDRTSLCEMTVRGDMIFVDEDGR
LDDASFPEIISQAVAAQEGFRRIASRNPLLEGFLLGVKKLEVLGTARVGDSLRISLYKASRFGDFGILEGTVMNGDTLIA
RGEIKVWQSGSGAGSGA

Sequences:

>Translated_497_residues
MTNCPDRIYGSEFTPREIADAVRDGRLLSMEIEFNQNCNFSCIYCYASQASAKRDDLTRDEFLDIIGQARELGARKIIIL
GGEPTLYPHLMEMVRHIRSTGMDVELFTNGANVTPQLARELFENRARVVLKMNTLDESLQDTLCGRKGAHTQIQEAFANL
KLAGYPSPDCPLGVSSIICQQNVEELPRMWQWLRDQGILPYFEMMTPQGGAREHNMLELDSPRAEDFFNRIAEIDRTGYG
IHWQPQPPLVGGECLRHQYSCAVNSQGFVQSCVGITIPIGDLRRQSLREVLRDSEVVQDLKNYRDLIKGPCGTCEQLDHC
YGCRGSAYQLTGDYLASDPLCWKNSQRRDEIMFLPIDVSRFMPHKPPMLLVDRLLEIGDRTSLCEMTVRGDMIFVDEDGR
LDDASFPEIISQAVAAQEGFRRIASRNPLLEGFLLGVKKLEVLGTARVGDSLRISLYKASRFGDFGILEGTVMNGDTLIA
RGEIKVWQSGSGAGSGA
>Mature_496_residues
TNCPDRIYGSEFTPREIADAVRDGRLLSMEIEFNQNCNFSCIYCYASQASAKRDDLTRDEFLDIIGQARELGARKIIILG
GEPTLYPHLMEMVRHIRSTGMDVELFTNGANVTPQLARELFENRARVVLKMNTLDESLQDTLCGRKGAHTQIQEAFANLK
LAGYPSPDCPLGVSSIICQQNVEELPRMWQWLRDQGILPYFEMMTPQGGAREHNMLELDSPRAEDFFNRIAEIDRTGYGI
HWQPQPPLVGGECLRHQYSCAVNSQGFVQSCVGITIPIGDLRRQSLREVLRDSEVVQDLKNYRDLIKGPCGTCEQLDHCY
GCRGSAYQLTGDYLASDPLCWKNSQRRDEIMFLPIDVSRFMPHKPPMLLVDRLLEIGDRTSLCEMTVRGDMIFVDEDGRL
DDASFPEIISQAVAAQEGFRRIASRNPLLEGFLLGVKKLEVLGTARVGDSLRISLYKASRFGDFGILEGTVMNGDTLIAR
GEIKVWQSGSGAGSGA

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 55708; Mature: 55577

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNCPDRIYGSEFTPREIADAVRDGRLLSMEIEFNQNCNFSCIYCYASQASAKRDDLTRD
CCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCHH
EFLDIIGQARELGARKIIILGGEPTLYPHLMEMVRHIRSTGMDVELFTNGANVTPQLARE
HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
LFENRARVVLKMNTLDESLQDTLCGRKGAHTQIQEAFANLKLAGYPSPDCPLGVSSIICQ
HHHCCCEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCEECCCCCCCCCCCHHHHHHH
QNVEELPRMWQWLRDQGILPYFEMMTPQGGAREHNMLELDSPRAEDFFNRIAEIDRTGYG
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCC
IHWQPQPPLVGGECLRHQYSCAVNSQGFVQSCVGITIPIGDLRRQSLREVLRDSEVVQDL
EEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHH
KNYRDLIKGPCGTCEQLDHCYGCRGSAYQLTGDYLASDPLCWKNSQRRDEIMFLPIDVSR
HHHHHHHCCCCCCHHHHHHHHCCCCCCEEECCCHHCCCCCCCCCCCCCCCEEEEEECHHH
FMPHKPPMLLVDRLLEIGDRTSLCEMTVRGDMIFVDEDGRLDDASFPEIISQAVAAQEGF
HCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RRIASRNPLLEGFLLGVKKLEVLGTARVGDSLRISLYKASRFGDFGILEGTVMNGDTLIA
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECEEECCCEEEE
RGEIKVWQSGSGAGSGA
ECEEEEEECCCCCCCCC
>Mature Secondary Structure 
TNCPDRIYGSEFTPREIADAVRDGRLLSMEIEFNQNCNFSCIYCYASQASAKRDDLTRD
CCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCHH
EFLDIIGQARELGARKIIILGGEPTLYPHLMEMVRHIRSTGMDVELFTNGANVTPQLARE
HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
LFENRARVVLKMNTLDESLQDTLCGRKGAHTQIQEAFANLKLAGYPSPDCPLGVSSIICQ
HHHCCCEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHCCEECCCCCCCCCCCHHHHHHH
QNVEELPRMWQWLRDQGILPYFEMMTPQGGAREHNMLELDSPRAEDFFNRIAEIDRTGYG
HHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCC
IHWQPQPPLVGGECLRHQYSCAVNSQGFVQSCVGITIPIGDLRRQSLREVLRDSEVVQDL
EEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHH
KNYRDLIKGPCGTCEQLDHCYGCRGSAYQLTGDYLASDPLCWKNSQRRDEIMFLPIDVSR
HHHHHHHCCCCCCHHHHHHHHCCCCCCEEECCCHHCCCCCCCCCCCCCCCEEEEEECHHH
FMPHKPPMLLVDRLLEIGDRTSLCEMTVRGDMIFVDEDGRLDDASFPEIISQAVAAQEGF
HCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH
RRIASRNPLLEGFLLGVKKLEVLGTARVGDSLRISLYKASRFGDFGILEGTVMNGDTLIA
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECEEECCCEEEE
RGEIKVWQSGSGAGSGA
ECEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12791134 [H]