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The map label for this gene is yciR [C]

Identifier: 118579339

GI number: 118579339

Start: 947910

End: 950066

Strand: Reverse

Name: yciR [C]

Synonym: Ppro_0902

Alternate gene names: 118579339

Gene position: 950066-947910 (Counterclockwise)

Preceding gene: 118579340

Following gene: 118579338

Centisome position: 23.7

GC content: 61.75

Gene sequence:

>2157_bases
ATGATTGAGCAGACGAATTACTGCTCCGTCCTGGTGATAGACGACGACCCGATCATCAGGCACCTGACACGCATAACTCT
TGAAACCGCGGGGCATAGCGTCAACGACTGCCCGGACGGCACGACCGCCCTTGAGACATTCCTGGCAACCGGCCCGGATG
TCATCCTGTTGGACGTGATGCTGCCGGGCAAGGACGGCTTCAGCGTCTGCGCGGAGATTCGCGCGCTTCCCGAGGGACAG
ACCATTCCCATCGTCATGATGACCGGCCTGGACGATATCGAGTCGATCCACAAGGCCTACGGCGCGGGCGCCACCGACTT
CATCACCAAACCGCTCAACTGGCAAATTCTGGCCTACCGGGTCAACTACATCTTCAGGTCGAGCAGGGCCTTCAGGGACC
TGCGCACCAGCGAGGCGCGCCTGAGCAAGGCCCAGCAACTGGCCCGCATGGGCAGCTGGGAGTGGAACCCGCTGCTGGAT
GTGGTCCAGCTCTCGGAACCGTGCCGGCAGATCATGGGCATTGACTCCGCTACCCAGGTTCGTGACATAGCCTCGCTGAT
CGCCCTGGCTCACCCCCTGGGACGGCCGTACCTGCGTAAGGGACTGGACGCGCTCATGGAGCGGGGACGCCCCTTAAGTC
TCGATTGCCAGACGGCAACCGCCGACGAGGAGGACAAGCGCTTCATCCATCTGGAGGCCGAGGAACACAGGGATGCCTCG
GGCCGCATCACCCTCGTTTCTGGGACGATCCAGGACATCACGTCCCGAAAGCTGGCAGAAGAGAAGATCCGCTACCTTGC
CTACTACGACAGCCTGACCGGCCTTCCCAACCGGGTGCTCTTCAAGGAACACCTCAGGCGCGCCCTGGCGACCTCGGAAC
AACACAAACGCCAGTTGGCCATCATGTTGCTCGACCTGGACCGGTTCAAGGGGATCAACGACTCGCTGGGACACGATGCC
GGCGACCTGCTGCTGCAACAGGTGGCAGACCGCCTGCGCCTGCGCGTGCGCCCCTACGACACGGTCAGCCGCGACAGCGA
GGAGCAGAGGGATTCCCTGATAGCCCGCCTCGGCGGAGACGAGTTTACCATCCTTCTGGAGGGGATCACCACCCCGGAAG
CAGCGGCGCGCGTTGCCAGGAGAGTCATCGAAGCCCTTGAAGCCCCCTTCGCGCTGAACGGCAACGAGGTCTTCATCTCG
TGCAGCATCGGCATCAGCATCTACCCCCATGACGGCACGGATCTGGAGATTCTGGTCAAGAACGCCGACGTGGCCATGTA
CTGCGCCAAGGATCTGGGCTGCAGCACGTTCCAGTTCTACACCCAGGAGATGAACTCCGTCTCGCTCCAGCGCCTGATCC
TGGAAACACACCTGCGCAAGGCCTTTGAAAAGGAAGAATTCTTTCTCCACTACCAGCCGCAGATCGATTGCGTCACGAAC
CGGATCATCGGCCTGGAGGCCCTGGCGCGCTGGAACAACCCGGAACTGGGTCTGGTATCGCCGGGCTCCTTCATTCCCCT
GGCCGAGGAAACGGGACTGATCATAGCCCTCGATCGCTGGGTCCTCGCCACTGTCTGCAAACAGCTTGAAGCCTGGCAAG
CGGCGGGAATCCCCCTGGTCCGGGTGGCGGTCAACCTCTCTGCCAGACACTTCCTCAAGGCAAACCTGAACAAAACCATC
CAGCAGATCAGGTCGCGCGGCGCCGCGGCCCGTGATCACCTGGACCTGGAAATCACCGAGGGAATGCTGATGGAAAACGC
CGAGGAGGTGGTCAGCGTCCTGGGCATGCTGCAGGAAACCGGTGTCAACATATCCATCGACGATTTCGGCACCGGCTACT
CATCACTCAGCTACCTGACCCGCCTGCCGTTCCATACCCTGAAGATCGACAGGTCGTTTATCTCCCAGAGCGGCGACAAT
GTGGAAAGCGCCTCCGTCGTCACCGCCATCATCGCCCTTGCCCACTCCCTGGGCAAAGAGGTCGTGGCGGAGGGAGTCGA
AACCTCTACCCAACTGCAGTTCCTGAAGGAGAACGGCTGCCGGGTTATACAGGGATACCTGTTCAGCCGACCGCTCCCCG
AAGACAAGATCAGGGAACTGCTCCGGGAGGGCCGCATTCCCGGCGCCGTGGAACCGGTCCGGGAGCATGGTCGGTGA

Upstream 100 bases:

>100_bases
ACAACAGCGTCCTAGAAGGCACGGGACTTCTCGCGCGCATCGAGTCCGAATTCGCCATCGTTTCCCATGCACTGACCGAG
GTCATGCAGGGTGGTGATTC

Downstream 100 bases:

>100_bases
GGCTCTCCCCGTTCATGAAAAGCTTGAGCCTGCCGTTACTGCTGATGTTTTTCCTGCCCCTGACGCTCCCCCCCCTGGCC
ACGGGCGCCAGACAGGACGA

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 718

Protein sequence:

>718_residues
MIEQTNYCSVLVIDDDPIIRHLTRITLETAGHSVNDCPDGTTALETFLATGPDVILLDVMLPGKDGFSVCAEIRALPEGQ
TIPIVMMTGLDDIESIHKAYGAGATDFITKPLNWQILAYRVNYIFRSSRAFRDLRTSEARLSKAQQLARMGSWEWNPLLD
VVQLSEPCRQIMGIDSATQVRDIASLIALAHPLGRPYLRKGLDALMERGRPLSLDCQTATADEEDKRFIHLEAEEHRDAS
GRITLVSGTIQDITSRKLAEEKIRYLAYYDSLTGLPNRVLFKEHLRRALATSEQHKRQLAIMLLDLDRFKGINDSLGHDA
GDLLLQQVADRLRLRVRPYDTVSRDSEEQRDSLIARLGGDEFTILLEGITTPEAAARVARRVIEALEAPFALNGNEVFIS
CSIGISIYPHDGTDLEILVKNADVAMYCAKDLGCSTFQFYTQEMNSVSLQRLILETHLRKAFEKEEFFLHYQPQIDCVTN
RIIGLEALARWNNPELGLVSPGSFIPLAEETGLIIALDRWVLATVCKQLEAWQAAGIPLVRVAVNLSARHFLKANLNKTI
QQIRSRGAAARDHLDLEITEGMLMENAEEVVSVLGMLQETGVNISIDDFGTGYSSLSYLTRLPFHTLKIDRSFISQSGDN
VESASVVTAIIALAHSLGKEVVAEGVETSTQLQFLKENGCRVIQGYLFSRPLPEDKIRELLREGRIPGAVEPVREHGR

Sequences:

>Translated_718_residues
MIEQTNYCSVLVIDDDPIIRHLTRITLETAGHSVNDCPDGTTALETFLATGPDVILLDVMLPGKDGFSVCAEIRALPEGQ
TIPIVMMTGLDDIESIHKAYGAGATDFITKPLNWQILAYRVNYIFRSSRAFRDLRTSEARLSKAQQLARMGSWEWNPLLD
VVQLSEPCRQIMGIDSATQVRDIASLIALAHPLGRPYLRKGLDALMERGRPLSLDCQTATADEEDKRFIHLEAEEHRDAS
GRITLVSGTIQDITSRKLAEEKIRYLAYYDSLTGLPNRVLFKEHLRRALATSEQHKRQLAIMLLDLDRFKGINDSLGHDA
GDLLLQQVADRLRLRVRPYDTVSRDSEEQRDSLIARLGGDEFTILLEGITTPEAAARVARRVIEALEAPFALNGNEVFIS
CSIGISIYPHDGTDLEILVKNADVAMYCAKDLGCSTFQFYTQEMNSVSLQRLILETHLRKAFEKEEFFLHYQPQIDCVTN
RIIGLEALARWNNPELGLVSPGSFIPLAEETGLIIALDRWVLATVCKQLEAWQAAGIPLVRVAVNLSARHFLKANLNKTI
QQIRSRGAAARDHLDLEITEGMLMENAEEVVSVLGMLQETGVNISIDDFGTGYSSLSYLTRLPFHTLKIDRSFISQSGDN
VESASVVTAIIALAHSLGKEVVAEGVETSTQLQFLKENGCRVIQGYLFSRPLPEDKIRELLREGRIPGAVEPVREHGR
>Mature_718_residues
MIEQTNYCSVLVIDDDPIIRHLTRITLETAGHSVNDCPDGTTALETFLATGPDVILLDVMLPGKDGFSVCAEIRALPEGQ
TIPIVMMTGLDDIESIHKAYGAGATDFITKPLNWQILAYRVNYIFRSSRAFRDLRTSEARLSKAQQLARMGSWEWNPLLD
VVQLSEPCRQIMGIDSATQVRDIASLIALAHPLGRPYLRKGLDALMERGRPLSLDCQTATADEEDKRFIHLEAEEHRDAS
GRITLVSGTIQDITSRKLAEEKIRYLAYYDSLTGLPNRVLFKEHLRRALATSEQHKRQLAIMLLDLDRFKGINDSLGHDA
GDLLLQQVADRLRLRVRPYDTVSRDSEEQRDSLIARLGGDEFTILLEGITTPEAAARVARRVIEALEAPFALNGNEVFIS
CSIGISIYPHDGTDLEILVKNADVAMYCAKDLGCSTFQFYTQEMNSVSLQRLILETHLRKAFEKEEFFLHYQPQIDCVTN
RIIGLEALARWNNPELGLVSPGSFIPLAEETGLIIALDRWVLATVCKQLEAWQAAGIPLVRVAVNLSARHFLKANLNKTI
QQIRSRGAAARDHLDLEITEGMLMENAEEVVSVLGMLQETGVNISIDDFGTGYSSLSYLTRLPFHTLKIDRSFISQSGDN
VESASVVTAIIALAHSLGKEVVAEGVETSTQLQFLKENGCRVIQGYLFSRPLPEDKIRELLREGRIPGAVEPVREHGR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=449, Percent_Identity=39.8663697104677, Blast_Score=320, Evalue=2e-88,
Organism=Escherichia coli, GI87081921, Length=466, Percent_Identity=34.549356223176, Blast_Score=259, Evalue=5e-70,
Organism=Escherichia coli, GI226510982, Length=432, Percent_Identity=28.4722222222222, Blast_Score=189, Evalue=7e-49,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=36.6533864541833, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI87081845, Length=258, Percent_Identity=35.2713178294574, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI87081980, Length=272, Percent_Identity=36.0294117647059, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=34.5528455284553, Blast_Score=152, Evalue=9e-38,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=35.1239669421488, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI1786507, Length=254, Percent_Identity=31.1023622047244, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1787055, Length=302, Percent_Identity=30.1324503311258, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1788849, Length=272, Percent_Identity=32.7205882352941, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1788381, Length=454, Percent_Identity=26.6519823788546, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=197, Percent_Identity=35.0253807106599, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1786584, Length=191, Percent_Identity=30.8900523560209, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=199, Percent_Identity=31.6582914572864, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=32.1212121212121, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=30.9782608695652, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788394, Length=136, Percent_Identity=36.0294117647059, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=32.5443786982249, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1787816, Length=177, Percent_Identity=32.2033898305085, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=31.8918918918919, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=30.4093567251462, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1788550, Length=150, Percent_Identity=27.3333333333333, Blast_Score=70, Evalue=7e-13,
Organism=Escherichia coli, GI1787375, Length=119, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790299, Length=104, Percent_Identity=32.6923076923077, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI145693140, Length=102, Percent_Identity=38.2352941176471, Blast_Score=67, Evalue=6e-12,
Organism=Escherichia coli, GI1786599, Length=117, Percent_Identity=31.6239316239316, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87081974, Length=118, Percent_Identity=33.0508474576271, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=29.0697674418605, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=23.4234234234234, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 80040; Mature: 80040

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQTNYCSVLVIDDDPIIRHLTRITLETAGHSVNDCPDGTTALETFLATGPDVILLDVM
CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE
LPGKDGFSVCAEIRALPEGQTIPIVMMTGLDDIESIHKAYGAGATDFITKPLNWQILAYR
ECCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHCCCCCCEEEEEE
VNYIFRSSRAFRDLRTSEARLSKAQQLARMGSWEWNPLLDVVQLSEPCRQIMGIDSATQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
RDIASLIALAHPLGRPYLRKGLDALMERGRPLSLDCQTATADEEDKRFIHLEAEEHRDAS
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECHHCCCCC
GRITLVSGTIQDITSRKLAEEKIRYLAYYDSLTGLPNRVLFKEHLRRALATSEQHKRQLA
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
IMLLDLDRFKGINDSLGHDAGDLLLQQVADRLRLRVRPYDTVSRDSEEQRDSLIARLGGD
HHEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC
EFTILLEGITTPEAAARVARRVIEALEAPFALNGNEVFISCSIGISIYPHDGTDLEILVK
EEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEEEEEECCCCCCEEEEEE
NADVAMYCAKDLGCSTFQFYTQEMNSVSLQRLILETHLRKAFEKEEFFLHYQPQIDCVTN
CCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
RIIGLEALARWNNPELGLVSPGSFIPLAEETGLIIALDRWVLATVCKQLEAWQAAGIPLV
HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEE
RVAVNLSARHFLKANLNKTIQQIRSRGAAARDHLDLEITEGMLMENAEEVVSVLGMLQET
EEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEECCCHHHCCHHHHHHHHHHHHHC
GVNISIDDFGTGYSSLSYLTRLPFHTLKIDRSFISQSGDNVESASVVTAIIALAHSLGKE
CCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
VVAEGVETSTQLQFLKENGCRVIQGYLFSRPLPEDKIRELLREGRIPGAVEPVREHGR
HHHHCCCHHHHHHHHHHCCCEEEEHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHCCC
>Mature Secondary Structure
MIEQTNYCSVLVIDDDPIIRHLTRITLETAGHSVNDCPDGTTALETFLATGPDVILLDVM
CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEE
LPGKDGFSVCAEIRALPEGQTIPIVMMTGLDDIESIHKAYGAGATDFITKPLNWQILAYR
ECCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHCCCCCCEEEEEE
VNYIFRSSRAFRDLRTSEARLSKAQQLARMGSWEWNPLLDVVQLSEPCRQIMGIDSATQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
RDIASLIALAHPLGRPYLRKGLDALMERGRPLSLDCQTATADEEDKRFIHLEAEEHRDAS
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEECHHCCCCC
GRITLVSGTIQDITSRKLAEEKIRYLAYYDSLTGLPNRVLFKEHLRRALATSEQHKRQLA
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
IMLLDLDRFKGINDSLGHDAGDLLLQQVADRLRLRVRPYDTVSRDSEEQRDSLIARLGGD
HHEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHCCCC
EFTILLEGITTPEAAARVARRVIEALEAPFALNGNEVFISCSIGISIYPHDGTDLEILVK
EEEEEEECCCCHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEEEEEECCCCCCEEEEEE
NADVAMYCAKDLGCSTFQFYTQEMNSVSLQRLILETHLRKAFEKEEFFLHYQPQIDCVTN
CCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
RIIGLEALARWNNPELGLVSPGSFIPLAEETGLIIALDRWVLATVCKQLEAWQAAGIPLV
HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEE
RVAVNLSARHFLKANLNKTIQQIRSRGAAARDHLDLEITEGMLMENAEEVVSVLGMLQET
EEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEECCCHHHCCHHHHHHHHHHHHHC
GVNISIDDFGTGYSSLSYLTRLPFHTLKIDRSFISQSGDNVESASVVTAIIALAHSLGKE
CCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
VVAEGVETSTQLQFLKENGCRVIQGYLFSRPLPEDKIRELLREGRIPGAVEPVREHGR
HHHHCCCHHHHHHHHHHCCCEEEEHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]