| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is exeD [H]
Identifier: 118579256
GI number: 118579256
Start: 864007
End: 866310
Strand: Direct
Name: exeD [H]
Synonym: Ppro_0818
Alternate gene names: 118579256
Gene position: 864007-866310 (Clockwise)
Preceding gene: 118579255
Following gene: 118579257
Centisome position: 21.56
GC content: 59.59
Gene sequence:
>2304_bases ATGCTGTTTGTAACGCCTGTTGTGACATCTCTTTCCGTCAGACGACGCATGCCGGTTGCGGCACTGCTGCTCTCGGTCCT TTTGTCGGTTTCCGTCGCGTGCGCCGCCGAAATAGGCAAAGTCCGCACCGCTACCGACATGGCGGGAAACGTGGTCGTGG AGGAATTGGAATTCAAGAAAGCAGACGTTCAGGACGCCGTCCGGATCATCTCGGAATTGTCCGGAGTCAATATCGTTGCG ACCGGAGAGGCGGGCAAGAAGCGGGTGACGTTCTTTATCCGCAAGCAGACCGTGGCCGAGATCGTCGACTGCATCTGCCG GCTTTCCGGGCTCTGGTACCGGCATAATCCGAAATCCGGCGTTTTCATCCTGATGACCACTGAGGAGTACCAACGGGATA TCGTGGTCTTCCGCAACGAACCGATCAAGTCGTTCCAGCTCAAGTATCTCAATGTGGCTGTCGCCGCCAGAACCATCGCC GATCTCTACGGCGACCGGGTGGAGCTGCAGGGGAAGGCCAACTGGGATACGGGTGACGACTACGCCATCAGCGGGCTGGA TTCGGAGATCGAGAACGACGATGGCGATGATGACGACGACAGCAACAGCAACAGCAACAGCGGCAACGGCAGAAACAACC GCAACAACAGCGACAACAGCGACAACAGGAACAACCGTAGCAATGACGGCTCCGGAAGCAGATCCGGCCGCACCGAGGAA AAGCTGAACCTGACTTCGGCCCAGCTTGCCCTGCTTGAACAGAAAGCCAAGACGGAGCTGCAGATACCCGAAGGAATGCT CCGCCAGTTGACCGAACGCAAAACAGCTCCCATCTACGTGACCATCAACCGGCAGCACAACATCCTCTTCGTCCGCACCT CCGACGAAAAGGCGCTCACCGAGATCGCGAAGGTGGTGCAGGATTCCGATCGGCAGGTGCCGGAGGTGCTGCTGGAGATG AAGGTACTGGAGGTACAGCTCAACGACAAGTTCGAATCGGCTTTCACCATCAGCACCATCAGCGGCGGCAGCCAGACCGG CCCCGATGACGGTCAGGTCGCCAACCCCCTGAACACCGCCGCATCCGCCGTGGGCAGTACCTTGTTGGGTATGGGTAATT TCGCTCTCAATTCCGAGAGTACCCTGACCTATCAGTTTCTGAGTTCGGATCTGCGCCTGCGGTTACAGCTCTTGCAGCAG AACAATAACCTCACGACCATCGCCACGCCGATGCTCATGGCCGCCAACAACCATCCGGCCCGGCTGTTCATCGGAGAGGA GACGGTGCTGACAACCGGCTTCACGACAATGACATCGACCTCAACCACCACCAGCGGCGTGGTGGTCAATAACACCCTTC CCGTTCCCGTGACGGAAACCAAGAGCGTCGGCAATACCCTGACCATTCTTCCCTCCATCAATGCCGACCGTTCGGTGGTG ATGCGGATCGTGCATGAGAATTCAAGTGTCAAAACCAACGGCGCCAGCATTCCGTTGCCGGTGGGGACGACCGTTCAGAC CGTTTCCATAGATACCGTCAACACGTCGAAACTGGAAGGAACCGTGCTGGCCCAGGATGGCATGACGGTTGCCGTGGGAG GGATGATGCGGACGAATATCACCGACTACGAAAGCAAGGTGCCGCTGCTGGGCGATATCCCTTACCTGGGCTTCTTCTTC AAACAGAAACAGAAGATCAAAACCAAGACGGAACTGGTGCTCCTGATAACCCCCTACATACTCCAAGCGCCGAACCTGGG AGAGGCCGTTACCCGGCGGCGACTGAACGATCTGTCGGGGAATACCGGTGAAATCAACTCCTATATGGACAAGCTGGAAC AGGAGCGTTCCGCAACCGGGACTAGCCGGACCGACGCCGCGAACCGGCATGCGGAACCGCCCGCAGACGTTGTCGGCGGG AAGGAACAGGGCATTGCCGAGTTGATCAAGACAGCGGCCGTCCAGGTGCGCCAGCCCCTGTCGCTCAGGCAGCCGGTGGG CGCTGTCCGGCCGGCGCCGCTGGACGTCCGGGGCGAGGTTCAGGTTTTCACCGTCAGCGGCGTTGCGGCGTTGCCCACGG CCGCCTGGAGCGACGGCCGGCACTTCGTGACCGCCCTGAAGGTCGTCAACCGGACCAGCAGGGAGCTGAAACTGGATGTC ACCGCTCTGCGGGGCGTCTGGGCCGCCGCGACCCTGGAGCGGCAGGAACTGGCGCCCGCCGGCAGGGACGGTGATTCCAC CTGGCTGTATCTTGTTTCCGAAACCGGCTTTGAAAACGTGATTGCCGGGAGCGGGAGCAAATGA
Upstream 100 bases:
>100_bases ATCGACACGGCTATCCGGATCAAGAAAATCAACAGACTCAATATGTTGGTCGAAGCAGGATCGCTGGGCCGGATGATTAT TGTCCACTAAAGGGGACCTC
Downstream 100 bases:
>100_bases ACCCCAAAAAGGGCGGTTGTTCACGCGAAGTCACGAAGTTCGCGCAGAAAACCGGATGGTTGGACAAGGCGCTGGAATCA CCTGTTCGGTGAAAGGGGAT
Product: type II and III secretion system protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 767; Mature: 767
Protein sequence:
>767_residues MLFVTPVVTSLSVRRRMPVAALLLSVLLSVSVACAAEIGKVRTATDMAGNVVVEELEFKKADVQDAVRIISELSGVNIVA TGEAGKKRVTFFIRKQTVAEIVDCICRLSGLWYRHNPKSGVFILMTTEEYQRDIVVFRNEPIKSFQLKYLNVAVAARTIA DLYGDRVELQGKANWDTGDDYAISGLDSEIENDDGDDDDDSNSNSNSGNGRNNRNNSDNSDNRNNRSNDGSGSRSGRTEE KLNLTSAQLALLEQKAKTELQIPEGMLRQLTERKTAPIYVTINRQHNILFVRTSDEKALTEIAKVVQDSDRQVPEVLLEM KVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTAASAVGSTLLGMGNFALNSESTLTYQFLSSDLRLRLQLLQQ NNNLTTIATPMLMAANNHPARLFIGEETVLTTGFTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVV MRIVHENSSVKTNGASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLLGDIPYLGFFF KQKQKIKTKTELVLLITPYILQAPNLGEAVTRRRLNDLSGNTGEINSYMDKLEQERSATGTSRTDAANRHAEPPADVVGG KEQGIAELIKTAAVQVRQPLSLRQPVGAVRPAPLDVRGEVQVFTVSGVAALPTAAWSDGRHFVTALKVVNRTSRELKLDV TALRGVWAAATLERQELAPAGRDGDSTWLYLVSETGFENVIAGSGSK
Sequences:
>Translated_767_residues MLFVTPVVTSLSVRRRMPVAALLLSVLLSVSVACAAEIGKVRTATDMAGNVVVEELEFKKADVQDAVRIISELSGVNIVA TGEAGKKRVTFFIRKQTVAEIVDCICRLSGLWYRHNPKSGVFILMTTEEYQRDIVVFRNEPIKSFQLKYLNVAVAARTIA DLYGDRVELQGKANWDTGDDYAISGLDSEIENDDGDDDDDSNSNSNSGNGRNNRNNSDNSDNRNNRSNDGSGSRSGRTEE KLNLTSAQLALLEQKAKTELQIPEGMLRQLTERKTAPIYVTINRQHNILFVRTSDEKALTEIAKVVQDSDRQVPEVLLEM KVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTAASAVGSTLLGMGNFALNSESTLTYQFLSSDLRLRLQLLQQ NNNLTTIATPMLMAANNHPARLFIGEETVLTTGFTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVV MRIVHENSSVKTNGASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLLGDIPYLGFFF KQKQKIKTKTELVLLITPYILQAPNLGEAVTRRRLNDLSGNTGEINSYMDKLEQERSATGTSRTDAANRHAEPPADVVGG KEQGIAELIKTAAVQVRQPLSLRQPVGAVRPAPLDVRGEVQVFTVSGVAALPTAAWSDGRHFVTALKVVNRTSRELKLDV TALRGVWAAATLERQELAPAGRDGDSTWLYLVSETGFENVIAGSGSK >Mature_767_residues MLFVTPVVTSLSVRRRMPVAALLLSVLLSVSVACAAEIGKVRTATDMAGNVVVEELEFKKADVQDAVRIISELSGVNIVA TGEAGKKRVTFFIRKQTVAEIVDCICRLSGLWYRHNPKSGVFILMTTEEYQRDIVVFRNEPIKSFQLKYLNVAVAARTIA DLYGDRVELQGKANWDTGDDYAISGLDSEIENDDGDDDDDSNSNSNSGNGRNNRNNSDNSDNRNNRSNDGSGSRSGRTEE KLNLTSAQLALLEQKAKTELQIPEGMLRQLTERKTAPIYVTINRQHNILFVRTSDEKALTEIAKVVQDSDRQVPEVLLEM KVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTAASAVGSTLLGMGNFALNSESTLTYQFLSSDLRLRLQLLQQ NNNLTTIATPMLMAANNHPARLFIGEETVLTTGFTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVV MRIVHENSSVKTNGASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLLGDIPYLGFFF KQKQKIKTKTELVLLITPYILQAPNLGEAVTRRRLNDLSGNTGEINSYMDKLEQERSATGTSRTDAANRHAEPPADVVGG KEQGIAELIKTAAVQVRQPLSLRQPVGAVRPAPLDVRGEVQVFTVSGVAALPTAAWSDGRHFVTALKVVNRTSRELKLDV TALRGVWAAATLERQELAPAGRDGDSTWLYLVSETGFENVIAGSGSK
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG1450
COG function: function code NU; Type II secretory pathway, component PulD
Gene ontology:
Cell location: Cell outer membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=324, Percent_Identity=26.8518518518519, Blast_Score=88, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR004846 - InterPro: IPR013356 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 83121; Mature: 83121
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFVTPVVTSLSVRRRMPVAALLLSVLLSVSVACAAEIGKVRTATDMAGNVVVEELEFKK CEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCCCEEEHHHHHH ADVQDAVRIISELSGVNIVATGEAGKKRVTFFIRKQTVAEIVDCICRLSGLWYRHNPKSG CCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHCCCEEEECCCCC VFILMTTEEYQRDIVVFRNEPIKSFQLKYLNVAVAARTIADLYGDRVELQGKANWDTGDD EEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC YAISGLDSEIENDDGDDDDDSNSNSNSGNGRNNRNNSDNSDNRNNRSNDGSGSRSGRTEE EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH KLNLTSAQLALLEQKAKTELQIPEGMLRQLTERKTAPIYVTINRQHNILFVRTSDEKALT HHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHH EIAKVVQDSDRQVPEVLLEMKVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTA HHHHHHHCCCCHHHHHHHHHHEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHH ASAVGSTLLGMGNFALNSESTLTYQFLSSDLRLRLQLLQQNNNLTTIATPMLMAANNHPA HHHHHHHHHHCCCEEECCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCE RLFIGEETVLTTGFTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVV EEEECCCEEEEECCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHH MRIVHENSSVKTNGASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNI EEEEECCCCEECCCCEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCEEEECCEEECCC TDYESKVPLLGDIPYLGFFFKQKQKIKTKTELVLLITPYILQAPNLGEAVTRRRLNDLSG CCHHCCCCCEECCCHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHCCC NTGEINSYMDKLEQERSATGTSRTDAANRHAEPPADVVGGKEQGIAELIKTAAVQVRQPL CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCC SLRQPVGAVRPAPLDVRGEVQVFTVSGVAALPTAAWSDGRHFVTALKVVNRTSRELKLDV CHHCCCCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEH TALRGVWAAATLERQELAPAGRDGDSTWLYLVSETGFENVIAGSGSK HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHCCCCCCC >Mature Secondary Structure MLFVTPVVTSLSVRRRMPVAALLLSVLLSVSVACAAEIGKVRTATDMAGNVVVEELEFKK CEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEHHHCCCCCEEEHHHHHH ADVQDAVRIISELSGVNIVATGEAGKKRVTFFIRKQTVAEIVDCICRLSGLWYRHNPKSG CCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHCCCEEEECCCCC VFILMTTEEYQRDIVVFRNEPIKSFQLKYLNVAVAARTIADLYGDRVELQGKANWDTGDD EEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC YAISGLDSEIENDDGDDDDDSNSNSNSGNGRNNRNNSDNSDNRNNRSNDGSGSRSGRTEE EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH KLNLTSAQLALLEQKAKTELQIPEGMLRQLTERKTAPIYVTINRQHNILFVRTSDEKALT HHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHH EIAKVVQDSDRQVPEVLLEMKVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTA HHHHHHHCCCCHHHHHHHHHHEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHH ASAVGSTLLGMGNFALNSESTLTYQFLSSDLRLRLQLLQQNNNLTTIATPMLMAANNHPA HHHHHHHHHHCCCEEECCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCE RLFIGEETVLTTGFTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVV EEEECCCEEEEECCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHH MRIVHENSSVKTNGASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNI EEEEECCCCEECCCCEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCEEEECCEEECCC TDYESKVPLLGDIPYLGFFFKQKQKIKTKTELVLLITPYILQAPNLGEAVTRRRLNDLSG CCHHCCCCCEECCCHHHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHCCC NTGEINSYMDKLEQERSATGTSRTDAANRHAEPPADVVGGKEQGIAELIKTAAVQVRQPL CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCC SLRQPVGAVRPAPLDVRGEVQVFTVSGVAALPTAAWSDGRHFVTALKVVNRTSRELKLDV CHHCCCCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEH TALRGVWAAATLERQELAPAGRDGDSTWLYLVSETGFENVIAGSGSK HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1640836 [H]