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The map label for this gene is cspA [H]

Identifier: 118579190

GI number: 118579190

Start: 793673

End: 793876

Strand: Reverse

Name: cspA [H]

Synonym: Ppro_0752

Alternate gene names: 118579190

Gene position: 793876-793673 (Counterclockwise)

Preceding gene: 118579191

Following gene: 118579186

Centisome position: 19.81

GC content: 54.41

Gene sequence:

>204_bases
ATGGCAACAGGAACAGTCAAATGGTTCAACGAGAGCAAGGGTTTCGGATTTATCGAGCAGGATGACGGCAGCGGCGATGT
CTTTGTCCACTTCTCCGCAATCACCGGCAGCGGCTTCAAGACACTGGCCGAAGGAGAGAAGGTCACGTATAACGTCGTCA
AGGGCCCCAAGGGACTACAGGCCGAAGAGGTTCAGAAGCAGTAG

Upstream 100 bases:

>100_bases
TTTCAGCGGGAGTTTCCTTGAGGGGATGCCGATGGAGGATCACGTTGGCCGGCAATCAGCCGTTCAGGGGCATGACAGAC
AACAAAGGAGAGAACAGGAA

Downstream 100 bases:

>100_bases
TACTCCCCCCTCCCCAAAAACAAAAAACCTGCATTCGCAGGCTTTTTTTATTGTCACGGCATGTTCAGCAGGCTCACGAC
CGGTGCCGGACAGCATGGCA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MATGTVKWFNESKGFGFIEQDDGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVKGPKGLQAEEVQKQ

Sequences:

>Translated_67_residues
MATGTVKWFNESKGFGFIEQDDGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVKGPKGLQAEEVQKQ
>Mature_66_residues
ATGTVKWFNESKGFGFIEQDDGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVKGPKGLQAEEVQKQ

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=65.5737704918033, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=67.2131147540984, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1789979, Length=62, Percent_Identity=61.2903225806452, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=59.6774193548387, Blast_Score=75, Evalue=6e-16,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=59.6774193548387, Blast_Score=75, Evalue=8e-16,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=56.4516129032258, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=48.4375, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7229; Mature: 7098

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNESKGFGFIEQDDGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVKGPKGLQ
CCCCCEEEEECCCCCCEEECCCCCCCEEEEEEEECCCCCEECCCCCEEEEEEECCCCCCC
AEEVQKQ
CCCCCCC
>Mature Secondary Structure 
ATGTVKWFNESKGFGFIEQDDGSGDVFVHFSAITGSGFKTLAEGEKVTYNVVKGPKGLQ
CCCCEEEEECCCCCCEEECCCCCCCEEEEEEEECCCCCEECCCCCEEEEEEECCCCCCC
AEEVQKQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]