| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is atoS [C]
Identifier: 118579155
GI number: 118579155
Start: 747555
End: 750227
Strand: Direct
Name: atoS [C]
Synonym: Ppro_0716
Alternate gene names: 118579155
Gene position: 747555-750227 (Clockwise)
Preceding gene: 118579149
Following gene: 118579156
Centisome position: 18.65
GC content: 59.93
Gene sequence:
>2673_bases ATGAAGATACCATCCCGATATAACGGGCTCCTGGAGAGAATTCGCATCGTCGCCATCTACGCCCTGTTCGGTTCCCTCTG GATCTACCTCTCCGATACGGTTGTGGGATGGCTGATACATGATCCCCTCGTCATCACCCGCCTCTCCGTTTACAAGGGGA TTCTGTTCATCGCTCTCACCTCAGGCCTGCTCTACTTCCTGATCGCGCGCTATCTCTCGCGCATGGCGGAGTACAACCGG GAACTGGTGAAGAGCGAAGAGCGCTTCGTCTCCATCTTCAACAACATGTCGGACGCGATCTTCATTCATGACGCAGGTAG CGGCGCCATTGTGGATGCCAATGAATCGGTGTTCAGGATGTTCGGCTATGATCGCGACGAAATGGTCCGGCTTCAGGTCG GTGACATCAGCCAGGGGGAGGCGCCCTATTCCCAGACCGACGCGTTGCAATGGCTCCGCCGTGCCGCCGATGACGCGTCG CCGCTCACATTCGAGTGGCGCTGCAGGAGAAAGGACGGGAGCCTGTTCTGGGTAGAGTGCACCATGCGCAAGGCGCTGAT CGGGGGGGGGGAGTTCATCATCGTTGCGGTGCGCGACATCAGCGAACGGAGAGATGTTGCCGAAGCGTTGCGGCGATCGG AGTACACCAACACAACTTTCAACAGGATATCCAGAATCTTTCTCACCAGCCTCGATGACGAGGATATGTTCGATTCCGTG CTCAAGGTTGTCCTTGACGTCATGGCCAGCCCCTACGGTATTTTCGGTTACATTGACGAAAACGGTTCCATGGTCTGTCC CTCGATGACCAAGGAGATCTGGAGCGAGTGTCAGATGAACCACAAGAGCACTGTCTTTCCCGAATTATCCTGGGGTGACA GCATCTGGGGTGCAAGCCTGAGGGACGGCGAGTCGCGCCGCGTGAACCAACCGTTCACGGTACCGGAGGGGCATGTCCCC ATCCAGCGCTGTCTCTGTGTGCCGCTGGTGTACCAGGGGAACGCCATTGGCCTGTTTATCGTGGCCAACAAATCCACCGA CTATACCGACGAGGAGCTGCGGGCGCTGCAATCCATAGCCGAACATGCCGCGCCGGTGCTCTACGCCAGGCTCCAGCAGC AGAAGGCAACCAGGGCCTTGGTGGAGAGCGAAAACCGGCTGCGGGTGATCTTTGAAGCCAGCCCGGCCGGGATCATCATG ACATCCCCCTCCGGCGCGATCAGCTTTGCCAACCAGCGTATGGCCGAGCTGTTCGGCTACTCCCTGGGGGAACTGGTTGG AACCTCCTACCTATCCCACGTACACTCTGAGCAGTGCGAGGCCGCAGAGCATGAGATTCAGCGTCTTGTCAGCGGAGGGA TCGGTTCCACCAACACCGAGCGGCACTACATCCGTGCGGATGGGAGCGATTTCTGGGGACATGTCAGCAGTCGCCGCTAT GAGGATACGGATGGTGTTCTGGTTTCCATCGTAGCGATCGTTGCCGATATGACCGAACTGAAACAGGCCGAGGAACAGCG CCGCAAGCTGGAGCAGCAGATGCTCCACGTGCAGAAGCTGGAGAGCCTTGGGGTTCTGGCGGGCGGCATCGCCCATGATT TCAATAATATACTGCTGGCCATAACCGGGAATGCCAGCCTGGCCTTGATGCGTCTCAGCCCGGACTCTCCGGCGGTGCAT CACCTGCGGCAGATCGAGAAAGCGGCCGACAAGGCGGCCGACCTGGCCCGCCAGATGCTGGCGTACTCGGGCAAGGGGCG TTTTGTCGTCGAGGCCCTGAACCTGAACCAGGTGGTGGAGGAGATGACCAGCATGCTGCACGTCTCCATCTCCAAGCGGG CCACCCTCCGCTATCACCTGGCCCCGGAGCTGCCCGCCATCGAGGCCGATGCGACCCAGATCCGGCAGGTTGTCATGAAT CTGGCCATCAATGCCTCCGAGGCCATCGGCGACAGGGATGGCGTCATCTCCATAGCCACCGGCAGCATGGAATGCGACCA GAGGTACCTGCGCGAGACCTGGCTGGACCAGAGTCTGAGCGAGGGATTCTACGTCTATCTGGAAGTGGCGGATACCGGCT GCGGCATGAGCCGTGAGACCATGGAGCGGATTTTCGACCCCTTTTTTACCACCAAGTTTACCGGCCGCGGCCTGGGCATG GCCGCCATCCTCGGTATTGTCCGCGGCCACCACGGGGCTATCAAGATCTACAGCGAGCCGGGCAGGGGGAGCTCCTTCAA GATCCTGCTCCCGGCCAGCCAGCGCCCCGTGGAGCGACTCCACGAACCGCTTGCCCCTGCCCATTGGCGGGGAGATGGCC TTGTGCTGCTGGTGGACGACGAGGAGATCATTCGCACCATCGGCACGGACATGCTCACGGAACTGGGATTTGATGTTGTG ACCGCCCAGGATGGCCGCGAGGCGGTGGAACTGTTTCGCCGAGACCCGGGCGGGATCACCTTTGTCGTACTGGACCTGAC CATGCCGCACATGAGCGGTGAGGAGACCTTTCGCGAGATGCGCCGCATCGATCCGGCGGTCAAGGTGATCATGTCCAGCG GCTATAACGAATATGAGGTCACCCAGAAGTTCGTGGGCAAGGGGTTGGCCGGTTTCATTCAGAAACCGTACTCGCTGTCC ATCCTGACGGACGTGATCCGCAACATCCTCTGA
Upstream 100 bases:
>100_bases ATAATTGCTTTTGCTTTATAAATGTCAAATTATGGCATGCACATGGAAGTGTTTTGCATGCTGTTTTGAAGAGGCTTTTT CTGGTTATGCGGAGATTCTG
Downstream 100 bases:
>100_bases AATCACGGAAGAGCGAGCAGGCAGTCGGACGCAGCCGATCCGGCGACAGGGGGCAAAGGCAGACTATGCGGTGGCAGAAC AGCAATTTTCCCTACATCAG
Product: signal transduction histidine kinase NtrB
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 890; Mature: 890
Protein sequence:
>890_residues MKIPSRYNGLLERIRIVAIYALFGSLWIYLSDTVVGWLIHDPLVITRLSVYKGILFIALTSGLLYFLIARYLSRMAEYNR ELVKSEERFVSIFNNMSDAIFIHDAGSGAIVDANESVFRMFGYDRDEMVRLQVGDISQGEAPYSQTDALQWLRRAADDAS PLTFEWRCRRKDGSLFWVECTMRKALIGGGEFIIVAVRDISERRDVAEALRRSEYTNTTFNRISRIFLTSLDDEDMFDSV LKVVLDVMASPYGIFGYIDENGSMVCPSMTKEIWSECQMNHKSTVFPELSWGDSIWGASLRDGESRRVNQPFTVPEGHVP IQRCLCVPLVYQGNAIGLFIVANKSTDYTDEELRALQSIAEHAAPVLYARLQQQKATRALVESENRLRVIFEASPAGIIM TSPSGAISFANQRMAELFGYSLGELVGTSYLSHVHSEQCEAAEHEIQRLVSGGIGSTNTERHYIRADGSDFWGHVSSRRY EDTDGVLVSIVAIVADMTELKQAEEQRRKLEQQMLHVQKLESLGVLAGGIAHDFNNILLAITGNASLALMRLSPDSPAVH HLRQIEKAADKAADLARQMLAYSGKGRFVVEALNLNQVVEEMTSMLHVSISKRATLRYHLAPELPAIEADATQIRQVVMN LAINASEAIGDRDGVISIATGSMECDQRYLRETWLDQSLSEGFYVYLEVADTGCGMSRETMERIFDPFFTTKFTGRGLGM AAILGIVRGHHGAIKIYSEPGRGSSFKILLPASQRPVERLHEPLAPAHWRGDGLVLLVDDEEIIRTIGTDMLTELGFDVV TAQDGREAVELFRRDPGGITFVVLDLTMPHMSGEETFREMRRIDPAVKVIMSSGYNEYEVTQKFVGKGLAGFIQKPYSLS ILTDVIRNIL
Sequences:
>Translated_890_residues MKIPSRYNGLLERIRIVAIYALFGSLWIYLSDTVVGWLIHDPLVITRLSVYKGILFIALTSGLLYFLIARYLSRMAEYNR ELVKSEERFVSIFNNMSDAIFIHDAGSGAIVDANESVFRMFGYDRDEMVRLQVGDISQGEAPYSQTDALQWLRRAADDAS PLTFEWRCRRKDGSLFWVECTMRKALIGGGEFIIVAVRDISERRDVAEALRRSEYTNTTFNRISRIFLTSLDDEDMFDSV LKVVLDVMASPYGIFGYIDENGSMVCPSMTKEIWSECQMNHKSTVFPELSWGDSIWGASLRDGESRRVNQPFTVPEGHVP IQRCLCVPLVYQGNAIGLFIVANKSTDYTDEELRALQSIAEHAAPVLYARLQQQKATRALVESENRLRVIFEASPAGIIM TSPSGAISFANQRMAELFGYSLGELVGTSYLSHVHSEQCEAAEHEIQRLVSGGIGSTNTERHYIRADGSDFWGHVSSRRY EDTDGVLVSIVAIVADMTELKQAEEQRRKLEQQMLHVQKLESLGVLAGGIAHDFNNILLAITGNASLALMRLSPDSPAVH HLRQIEKAADKAADLARQMLAYSGKGRFVVEALNLNQVVEEMTSMLHVSISKRATLRYHLAPELPAIEADATQIRQVVMN LAINASEAIGDRDGVISIATGSMECDQRYLRETWLDQSLSEGFYVYLEVADTGCGMSRETMERIFDPFFTTKFTGRGLGM AAILGIVRGHHGAIKIYSEPGRGSSFKILLPASQRPVERLHEPLAPAHWRGDGLVLLVDDEEIIRTIGTDMLTELGFDVV TAQDGREAVELFRRDPGGITFVVLDLTMPHMSGEETFREMRRIDPAVKVIMSSGYNEYEVTQKFVGKGLAGFIQKPYSLS ILTDVIRNIL >Mature_890_residues MKIPSRYNGLLERIRIVAIYALFGSLWIYLSDTVVGWLIHDPLVITRLSVYKGILFIALTSGLLYFLIARYLSRMAEYNR ELVKSEERFVSIFNNMSDAIFIHDAGSGAIVDANESVFRMFGYDRDEMVRLQVGDISQGEAPYSQTDALQWLRRAADDAS PLTFEWRCRRKDGSLFWVECTMRKALIGGGEFIIVAVRDISERRDVAEALRRSEYTNTTFNRISRIFLTSLDDEDMFDSV LKVVLDVMASPYGIFGYIDENGSMVCPSMTKEIWSECQMNHKSTVFPELSWGDSIWGASLRDGESRRVNQPFTVPEGHVP IQRCLCVPLVYQGNAIGLFIVANKSTDYTDEELRALQSIAEHAAPVLYARLQQQKATRALVESENRLRVIFEASPAGIIM TSPSGAISFANQRMAELFGYSLGELVGTSYLSHVHSEQCEAAEHEIQRLVSGGIGSTNTERHYIRADGSDFWGHVSSRRY EDTDGVLVSIVAIVADMTELKQAEEQRRKLEQQMLHVQKLESLGVLAGGIAHDFNNILLAITGNASLALMRLSPDSPAVH HLRQIEKAADKAADLARQMLAYSGKGRFVVEALNLNQVVEEMTSMLHVSISKRATLRYHLAPELPAIEADATQIRQVVMN LAINASEAIGDRDGVISIATGSMECDQRYLRETWLDQSLSEGFYVYLEVADTGCGMSRETMERIFDPFFTTKFTGRGLGM AAILGIVRGHHGAIKIYSEPGRGSSFKILLPASQRPVERLHEPLAPAHWRGDGLVLLVDDEEIIRTIGTDMLTELGFDVV TAQDGREAVELFRRDPGGITFVVLDLTMPHMSGEETFREMRRIDPAVKVIMSSGYNEYEVTQKFVGKGLAGFIQKPYSLS ILTDVIRNIL
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=380, Percent_Identity=29.4736842105263, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1790436, Length=249, Percent_Identity=32.1285140562249, Blast_Score=123, Evalue=6e-29, Organism=Escherichia coli, GI48994928, Length=545, Percent_Identity=23.302752293578, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI1790300, Length=359, Percent_Identity=25.6267409470752, Blast_Score=92, Evalue=2e-19, Organism=Escherichia coli, GI87081816, Length=485, Percent_Identity=24.1237113402062, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1788713, Length=267, Percent_Identity=23.9700374531835, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI145693157, Length=404, Percent_Identity=21.7821782178218, Blast_Score=69, Evalue=2e-12, Organism=Escherichia coli, GI1788381, Length=165, Percent_Identity=26.0606060606061, Blast_Score=64, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 99534; Mature: 99534
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIPSRYNGLLERIRIVAIYALFGSLWIYLSDTVVGWLIHDPLVITRLSVYKGILFIALT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH SGLLYFLIARYLSRMAEYNRELVKSEERFVSIFNNMSDAIFIHDAGSGAIVDANESVFRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCHHHHHH FGYDRDEMVRLQVGDISQGEAPYSQTDALQWLRRAADDASPLTFEWRCRRKDGSLFWVEC HCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEE TMRKALIGGGEFIIVAVRDISERRDVAEALRRSEYTNTTFNRISRIFLTSLDDEDMFDSV EHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHH LKVVLDVMASPYGIFGYIDENGSMVCPSMTKEIWSECQMNHKSTVFPELSWGDSIWGASL HHHHHHHHCCCCEEEEEEECCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC RDGESRRVNQPFTVPEGHVPIQRCLCVPLVYQGNAIGLFIVANKSTDYTDEELRALQSIA CCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCEEEEEEEECCCCCCCHHHHHHHHHHH EHAAPVLYARLQQQKATRALVESENRLRVIFEASPAGIIMTSPSGAISFANQRMAELFGY HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHCC SLGELVGTSYLSHVHSEQCEAAEHEIQRLVSGGIGSTNTERHYIRADGSDFWGHVSSRRY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHCCCCCCCC EDTDGVLVSIVAIVADMTELKQAEEQRRKLEQQMLHVQKLESLGVLAGGIAHDFNNILLA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE ITGNASLALMRLSPDSPAVHHLRQIEKAADKAADLARQMLAYSGKGRFVVEALNLNQVVE EECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH EMTSMLHVSISKRATLRYHLAPELPAIEADATQIRQVVMNLAINASEAIGDRDGVISIAT HHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCEEEEEC GSMECDQRYLRETWLDQSLSEGFYVYLEVADTGCGMSRETMERIFDPFFTTKFTGRGLGM CCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCHHHHCEECCCCCHH AAILGIVRGHHGAIKIYSEPGRGSSFKILLPASQRPVERLHEPLAPAHWRGDGLVLLVDD HHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECC EEIIRTIGTDMLTELGFDVVTAQDGREAVELFRRDPGGITFVVLDLTMPHMSGEETFREM HHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHH RRIDPAVKVIMSSGYNEYEVTQKFVGKGLAGFIQKPYSLSILTDVIRNIL HHHCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCC >Mature Secondary Structure MKIPSRYNGLLERIRIVAIYALFGSLWIYLSDTVVGWLIHDPLVITRLSVYKGILFIALT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH SGLLYFLIARYLSRMAEYNRELVKSEERFVSIFNNMSDAIFIHDAGSGAIVDANESVFRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCHHHHHH FGYDRDEMVRLQVGDISQGEAPYSQTDALQWLRRAADDASPLTFEWRCRRKDGSLFWVEC HCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEE TMRKALIGGGEFIIVAVRDISERRDVAEALRRSEYTNTTFNRISRIFLTSLDDEDMFDSV EHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHH LKVVLDVMASPYGIFGYIDENGSMVCPSMTKEIWSECQMNHKSTVFPELSWGDSIWGASL HHHHHHHHCCCCEEEEEEECCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC RDGESRRVNQPFTVPEGHVPIQRCLCVPLVYQGNAIGLFIVANKSTDYTDEELRALQSIA CCCCCCCCCCCCCCCCCCCCHHHHHHHHEEEECCEEEEEEEECCCCCCCHHHHHHHHHHH EHAAPVLYARLQQQKATRALVESENRLRVIFEASPAGIIMTSPSGAISFANQRMAELFGY HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHCC SLGELVGTSYLSHVHSEQCEAAEHEIQRLVSGGIGSTNTERHYIRADGSDFWGHVSSRRY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHCCCCCCCC EDTDGVLVSIVAIVADMTELKQAEEQRRKLEQQMLHVQKLESLGVLAGGIAHDFNNILLA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE ITGNASLALMRLSPDSPAVHHLRQIEKAADKAADLARQMLAYSGKGRFVVEALNLNQVVE EECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH EMTSMLHVSISKRATLRYHLAPELPAIEADATQIRQVVMNLAINASEAIGDRDGVISIAT HHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCEEEEEC GSMECDQRYLRETWLDQSLSEGFYVYLEVADTGCGMSRETMERIFDPFFTTKFTGRGLGM CCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCHHHHCEECCCCCHH AAILGIVRGHHGAIKIYSEPGRGSSFKILLPASQRPVERLHEPLAPAHWRGDGLVLLVDD HHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECC EEIIRTIGTDMLTELGFDVVTAQDGREAVELFRRDPGGITFVVLDLTMPHMSGEETFREM HHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHH RRIDPAVKVIMSSGYNEYEVTQKFVGKGLAGFIQKPYSLSILTDVIRNIL HHHCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA