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The map label for this gene is ndhI [H]

Identifier: 118579036

GI number: 118579036

Start: 635070

End: 635459

Strand: Direct

Name: ndhI [H]

Synonym: Ppro_0597

Alternate gene names: 118579036

Gene position: 635070-635459 (Clockwise)

Preceding gene: 118579035

Following gene: 118579037

Centisome position: 15.85

GC content: 53.59

Gene sequence:

>390_bases
ATGATAACCATACCGGGCAAGATGGCCAAAGAGGTGCTGCGACATTCGATCATGGCGCCGGCAACCCGCAACTACCCCTT
CGAGAAGCTGGAGATGCCGGACAACTTTCGGGGGAAGATCGTCTTTGATTATGAAAAGTGCATTGGCTGCAAGATCTGCG
TCAGGGACTGCCCCGCACGGGCCATTACCATAACAAGGGTGGCGGATAAGGTGTTCGAGGCGGAATTCTATCTGGACAGG
TGCATCTACTGCGCCCAGTGCGTGGACTCGTGTCCCAAGGGAGCATTGGATAATACCCGGGAATTCGAACTGGCCCAGAT
TGACAGAACACAACACAGGATACACTTTCATGCAAAGACAGATGTCGGAGACGTTGAAGGCACGCCTTGA

Upstream 100 bases:

>100_bases
CGCGCATCGATCAGATGGTTGTTTTCTGCTGGAAGTATCTGGCTCCGGCCGCGATGGTCCAGATGCTGATCAATCTGATT
CTGAAGGGAGTTTTACCGCA

Downstream 100 bases:

>100_bases
GGGGTGCAGGCGGGTTGCGCTGCTGGGGATAGGATCGGAGCTTCGCGGGGATGATGCGGCAGGGATACTGGTTGTGCGCG
AGATGGGCAAACTGGTTTCC

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: NAD(P)H dehydrogenase I subunit I; NDH-1 subunit I; NDH-I [H]

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MITIPGKMAKEVLRHSIMAPATRNYPFEKLEMPDNFRGKIVFDYEKCIGCKICVRDCPARAITITRVADKVFEAEFYLDR
CIYCAQCVDSCPKGALDNTREFELAQIDRTQHRIHFHAKTDVGDVEGTP

Sequences:

>Translated_129_residues
MITIPGKMAKEVLRHSIMAPATRNYPFEKLEMPDNFRGKIVFDYEKCIGCKICVRDCPARAITITRVADKVFEAEFYLDR
CIYCAQCVDSCPKGALDNTREFELAQIDRTQHRIHFHAKTDVGDVEGTP
>Mature_129_residues
MITIPGKMAKEVLRHSIMAPATRNYPFEKLEMPDNFRGKIVFDYEKCIGCKICVRDCPARAITITRVADKVFEAEFYLDR
CIYCAQCVDSCPKGALDNTREFELAQIDRTQHRIHFHAKTDVGDVEGTP

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG1143

COG function: function code C; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1789075, Length=86, Percent_Identity=41.8604651162791, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1788617, Length=105, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17555194, Length=104, Percent_Identity=39.4230769230769, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17864306, Length=104, Percent_Identity=38.4615384615385, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012285
- InterPro:   IPR004497
- InterPro:   IPR010226 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14745; Mature: 14745

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
9.3 %Cys+Met (Translated Protein)
6.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
9.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIPGKMAKEVLRHSIMAPATRNYPFEKLEMPDNFRGKIVFDYEKCIGCKICVRDCPAR
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCEEEECCCCCC
AITITRVADKVFEAEFYLDRCIYCAQCVDSCPKGALDNTREFELAQIDRTQHRIHFHAKT
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEEEECC
DVGDVEGTP
CCCCCCCCC
>Mature Secondary Structure
MITIPGKMAKEVLRHSIMAPATRNYPFEKLEMPDNFRGKIVFDYEKCIGCKICVRDCPAR
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCEEEECCCCCC
AITITRVADKVFEAEFYLDRCIYCAQCVDSCPKGALDNTREFELAQIDRTQHRIHFHAKT
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEEEECC
DVGDVEGTP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA