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The map label for this gene is yibD [C]

Identifier: 118579017

GI number: 118579017

Start: 616099

End: 617676

Strand: Reverse

Name: yibD [C]

Synonym: Ppro_0578

Alternate gene names: 118579017

Gene position: 617676-616099 (Counterclockwise)

Preceding gene: 118579018

Following gene: 118579016

Centisome position: 15.41

GC content: 51.52

Gene sequence:

>1578_bases
ATGAGATATATTATAGTTTCGCCTGCATACGATCACGACTCGGCCTGGATAGTTGCGCTGCACGAACTACGGAAATGGCT
TATCAGGTCCGGCAAAGAGGCGATGATTCTCGACCTTGCCGCTCCTTGCAGAATCGAAAATGATGATATCGTCGTTTATC
CGGAAGCTGTTCCCGGGAACCCTTTACATGCAAAACGGGTTGTAAGGTATCTATTCAATACTCCCGGCAAGCCTGGCAGC
AGCAAGGAATACGACCGCAACGAACTGCTCGTTGCTTATTATCCCGGCCTTGCCCCCTCTTCCAATGGCGTGACTCTGAC
CATCCCCATTACCGACGATTGCTTTACCCACAAGGGTTATGAACGCAGTATCGACTGTTTTTGGGTTGGCAATGGCAAGA
ACACACAGCATCCGGTTACAAAAAACTGCCTGGAAATAACGCGTCAATGGGCAGCCCAACATGTAGAATTGTCGGAGCTC
CTCAACAGAACAAAAACATTCTATTCATACGATACTGAAACCATACTGTTACATGAGGCAGCGTGCTGCGGATGCGACAT
AAGGTTACTCATTGACGACAAAATTGTTGATTGCACCTTGTATCAACAGAGTCCGGATGCATTCAAAACGCAGCTGAGCA
CGTTCATTGAATTGACAGGGACTCCAGAAATAGATTCAACCGGAGAGTCCCTCAAAACCATTGATAAAACAGAATCACAT
CATCTCACATCACTCAATTCTCCGATCACACCGAAGGCATCCATTATTATTCCTCTTTACAACCAGGCTCATTTAACACG
CATGTGCGTGGAAGCGATCAAGGCTTCCGCTCCCATAACCAGCTACGAACTGGTCTTGATCGACAACGGTTCCCATGATT
GGACACCGGAGTACCTGGCAAGTCTTGGCACATCGGTCACCGTAATTACCAACCGTGAAAACCGTGGATTTGCCGTGGCG
TGCAACCAGGGCGCGCGGGCCGCGCGAGGAGATATCCTGGTGTTTCTCAACAATGACACCGTGCCAGAACAGGGGTGGCT
TGACGAATTGGTTGCGGCAATCGACAACGGCGAGGCTGAAATATGCGGTGCGCGGCTCCTCTATCCCGATGGTCGTTGTC
AACACGCCGGAGTCGCCTTTGACGAGCGGGGGTTGGGGTATCACATTTTTGCGGGCTTTCAGGGCGACTCAGCTCCGGTA
CGAGAACGCCGCCTGATGCAGGCGGTAACAGCCGCCTGCATGGCCATGAGAAAAGGCCTGTTCCATGAACTGGGAGGCTT
CGACGAGGGGTTTCGCAATGGTTTTGAGGATATAGATCTCTGCCTGCGGGCCGGCCAAAGGGGACATCGCATCCTCTTTG
TTCCCGAAAGCGTTGTGATACATCATGCCGAGCAGAGTAGCGGGCGCAAGGACAACGAACTCCACAATCTCAAGCACTTT
TTTTCCCGCTGGTTGAACAGGATTCGACAGGACGACATCCCCCTGTACGCCCGTTTTGGTTTTGAAAGCCGCAGAGAGCC
GGACGGCAGTTTGAGCATTGTTCCCGCCGAAAAGCCAAATCAAGACCACCGTTGCTGA

Upstream 100 bases:

>100_bases
AGTGAGAAGCGTGATGAACATGAACATCTAGCCGGGCCATGCCAACCCTTCTGGTCGAAATCCGCTCTCGCGCCATTGAC
GTAGTTTGTATGGAGCTTGC

Downstream 100 bases:

>100_bases
AGCATTGACGGGGGGAGCTGCACCGCATCAGGTTTCGCGGAAGCCCCCCCCTGCCGCACTCATTTCTCCGCCTCCCCCCT
GAAGACGCAGCACCAGCACG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MRYIIVSPAYDHDSAWIVALHELRKWLIRSGKEAMILDLAAPCRIENDDIVVYPEAVPGNPLHAKRVVRYLFNTPGKPGS
SKEYDRNELLVAYYPGLAPSSNGVTLTIPITDDCFTHKGYERSIDCFWVGNGKNTQHPVTKNCLEITRQWAAQHVELSEL
LNRTKTFYSYDTETILLHEAACCGCDIRLLIDDKIVDCTLYQQSPDAFKTQLSTFIELTGTPEIDSTGESLKTIDKTESH
HLTSLNSPITPKASIIIPLYNQAHLTRMCVEAIKASAPITSYELVLIDNGSHDWTPEYLASLGTSVTVITNRENRGFAVA
CNQGARAARGDILVFLNNDTVPEQGWLDELVAAIDNGEAEICGARLLYPDGRCQHAGVAFDERGLGYHIFAGFQGDSAPV
RERRLMQAVTAACMAMRKGLFHELGGFDEGFRNGFEDIDLCLRAGQRGHRILFVPESVVIHHAEQSSGRKDNELHNLKHF
FSRWLNRIRQDDIPLYARFGFESRREPDGSLSIVPAEKPNQDHRC

Sequences:

>Translated_525_residues
MRYIIVSPAYDHDSAWIVALHELRKWLIRSGKEAMILDLAAPCRIENDDIVVYPEAVPGNPLHAKRVVRYLFNTPGKPGS
SKEYDRNELLVAYYPGLAPSSNGVTLTIPITDDCFTHKGYERSIDCFWVGNGKNTQHPVTKNCLEITRQWAAQHVELSEL
LNRTKTFYSYDTETILLHEAACCGCDIRLLIDDKIVDCTLYQQSPDAFKTQLSTFIELTGTPEIDSTGESLKTIDKTESH
HLTSLNSPITPKASIIIPLYNQAHLTRMCVEAIKASAPITSYELVLIDNGSHDWTPEYLASLGTSVTVITNRENRGFAVA
CNQGARAARGDILVFLNNDTVPEQGWLDELVAAIDNGEAEICGARLLYPDGRCQHAGVAFDERGLGYHIFAGFQGDSAPV
RERRLMQAVTAACMAMRKGLFHELGGFDEGFRNGFEDIDLCLRAGQRGHRILFVPESVVIHHAEQSSGRKDNELHNLKHF
FSRWLNRIRQDDIPLYARFGFESRREPDGSLSIVPAEKPNQDHRC
>Mature_525_residues
MRYIIVSPAYDHDSAWIVALHELRKWLIRSGKEAMILDLAAPCRIENDDIVVYPEAVPGNPLHAKRVVRYLFNTPGKPGS
SKEYDRNELLVAYYPGLAPSSNGVTLTIPITDDCFTHKGYERSIDCFWVGNGKNTQHPVTKNCLEITRQWAAQHVELSEL
LNRTKTFYSYDTETILLHEAACCGCDIRLLIDDKIVDCTLYQQSPDAFKTQLSTFIELTGTPEIDSTGESLKTIDKTESH
HLTSLNSPITPKASIIIPLYNQAHLTRMCVEAIKASAPITSYELVLIDNGSHDWTPEYLASLGTSVTVITNRENRGFAVA
CNQGARAARGDILVFLNNDTVPEQGWLDELVAAIDNGEAEICGARLLYPDGRCQHAGVAFDERGLGYHIFAGFQGDSAPV
RERRLMQAVTAACMAMRKGLFHELGGFDEGFRNGFEDIDLCLRAGQRGHRILFVPESVVIHHAEQSSGRKDNELHNLKHF
FSRWLNRIRQDDIPLYARFGFESRREPDGSLSIVPAEKPNQDHRC

Specific function: Unknown

COG id: COG1216

COG function: function code R; Predicted glycosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI112807221, Length=280, Percent_Identity=26.7857142857143, Blast_Score=70, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71994065, Length=261, Percent_Identity=26.4367816091954, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71987788, Length=261, Percent_Identity=26.0536398467433, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71987784, Length=261, Percent_Identity=26.0536398467433, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71987795, Length=261, Percent_Identity=26.0536398467433, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 58816; Mature: 58816

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYIIVSPAYDHDSAWIVALHELRKWLIRSGKEAMILDLAAPCRIENDDIVVYPEAVPGN
CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCCCEEEECCCCCCC
PLHAKRVVRYLFNTPGKPGSSKEYDRNELLVAYYPGLAPSSNGVTLTIPITDDCFTHKGY
CHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHCCCCC
ERSIDCFWVGNGKNTQHPVTKNCLEITRQWAAQHVELSELLNRTKTFYSYDTETILLHEA
CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEC
ACCGCDIRLLIDDKIVDCTLYQQSPDAFKTQLSTFIELTGTPEIDSTGESLKTIDKTESH
CCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHCCCCC
HLTSLNSPITPKASIIIPLYNQAHLTRMCVEAIKASAPITSYELVLIDNGSHDWTPEYLA
CEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHH
SLGTSVTVITNRENRGFAVACNQGARAARGDILVFLNNDTVPEQGWLDELVAAIDNGEAE
HCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCE
ICGARLLYPDGRCQHAGVAFDERGLGYHIFAGFQGDSAPVRERRLMQAVTAACMAMRKGL
EEEEEEECCCCCCCCCCCEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
FHELGGFDEGFRNGFEDIDLCLRAGQRGHRILFVPESVVIHHAEQSSGRKDNELHNLKHF
HHHHCCCCHHHHCCHHHHHHHHHCCCCCCEEEEECCCEEEEECHHCCCCCCHHHHHHHHH
FSRWLNRIRQDDIPLYARFGFESRREPDGSLSIVPAEKPNQDHRC
HHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MRYIIVSPAYDHDSAWIVALHELRKWLIRSGKEAMILDLAAPCRIENDDIVVYPEAVPGN
CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCCCEEEECCCCCCC
PLHAKRVVRYLFNTPGKPGSSKEYDRNELLVAYYPGLAPSSNGVTLTIPITDDCFTHKGY
CHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCHHCCCCC
ERSIDCFWVGNGKNTQHPVTKNCLEITRQWAAQHVELSELLNRTKTFYSYDTETILLHEA
CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEC
ACCGCDIRLLIDDKIVDCTLYQQSPDAFKTQLSTFIELTGTPEIDSTGESLKTIDKTESH
CCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHCCCCC
HLTSLNSPITPKASIIIPLYNQAHLTRMCVEAIKASAPITSYELVLIDNGSHDWTPEYLA
CEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHH
SLGTSVTVITNRENRGFAVACNQGARAARGDILVFLNNDTVPEQGWLDELVAAIDNGEAE
HCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCE
ICGARLLYPDGRCQHAGVAFDERGLGYHIFAGFQGDSAPVRERRLMQAVTAACMAMRKGL
EEEEEEECCCCCCCCCCCEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
FHELGGFDEGFRNGFEDIDLCLRAGQRGHRILFVPESVVIHHAEQSSGRKDNELHNLKHF
HHHHCCCCHHHHCCHHHHHHHHHCCCCCCEEEEECCCEEEEECHHCCCCCCHHHHHHHHH
FSRWLNRIRQDDIPLYARFGFESRREPDGSLSIVPAEKPNQDHRC
HHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]