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The map label for this gene is ygiQ [C]

Identifier: 118578995

GI number: 118578995

Start: 592703

End: 594574

Strand: Direct

Name: ygiQ [C]

Synonym: Ppro_0556

Alternate gene names: 118578995

Gene position: 592703-594574 (Clockwise)

Preceding gene: 118578992

Following gene: 118579004

Centisome position: 14.79

GC content: 62.93

Gene sequence:

>1872_bases
ATGGCATTCATACCCACAACAAGATCAGAGATGCATAGGCGTGGCTGGGAGCAACTGGACGTTATTTTCGTCAACGGCGA
TGCCTATGTGGATCACCCCGCCTTCGGTGTGCCGCTCCTGGCCCGCTGGCTGGAGAAACACGGCTTCCGGGTCGGCGTCA
TTGCCCAGCCTGACTGGCGCTCAGTGGAACCCTTCATGGCCTTGGGCAGGCCGCGGCTCTTCTTCGCCGCATCGGCGGGA
GCCATGGATTCCATGGTGGCCCACTACACGCCGGCACGCAAGCTGCGTCATGACGATGCCTACACTCCGGGCAACCGCCA
CGGTGCCCGCCCCAACCGGGCCACCCTGATCTATACCTCCCGGCTGAAGGAGGCCTTCCGCGATGTGCCGGTGGTAATCG
GCGGGATCGAGGCCTCGCTGCGACGCTTCGCCCACTACGATTACTGGGAAAACCGTGTGCGGCGTTCGCTGCTCTTCGAC
GCCAAGGCCGATCTCCTGCTCTACGGCATGGCCGAACGTTCGATGCTGGAACTGGCGCAACGCATGGGGCGGGGTGAGTC
TCTGGCGGATATACGGGGGCTGCGCGGTACCTGCTGGGTTGAAAAGGCCGGTCATCATCTAACCGATCACCTGGAGATCC
CCTGCTTTGAGGAGTGCGGCAGCGACCGGCTGAAGTTTGCCGAGGCGTTCCGGCTGGCAAGCAGGGAACAGAACCCCTAT
AACGGCCGGACCATCGTCCAGCGCCATGGCGATCGCCTGCTGGTCTGCGCTCCCCCTTCTTTGCCGCTGGAGGAGGCGGA
GATGGATAGTCTCTACGCCCTTCCTTTCGAGAAGGCTCCCCATCCATCCTATGGTGAAACGATCCCGGCCTGGGAGCAGA
TCAGGTGCTCCATAACCAGTCATCGCGGCTGTTTCGGCGGCTGCTCTTTCTGCGCCATTGCCATGCATCAGGGGAAGCTG
ATCCAGTCCCGCGGTCAGTCTTCCGTGGAGAGCGAGATCCGCGAACTGGTTCGCAAGCCCTGGTTCCGGGGCAGCATCAG
CGATATCGGTGGACCCACCGCCAATATGTACGGACTCTCCTGTGGCGATTCCGCAGCCATGAAATGCTGCCGCAGGGAGA
GCTGCCTCTTCCCGAAGCAGTGCCGGCATCTGATCGTGGATGACCGGCGAGCCGTCCGCCTGCTGCATGCGGCCCGCGAC
TTCGCGGGGGTACGTCATGTTGCGGTGTCGTCGGGGGTGCGCTACGATCTGCTGGAACGGCAGCCGGCCTACTGCCGGGA
ACTGATCGCTCACCATGTGGGGGGATTGCTCAAGGTGGCGCCGGAGCATCTGGTGGAACGGGTCACGATGCTGATGCGCA
AACCGGGACTGGCGGTTTTCGAGCGTTTCCTGTCCCGCTTTCGCGAAGAGAGCAGGCGCCTCGGCAAGCCGCAGGGCATC
GTGCCGTATCTGATTTCCGGCCACCCCGGCTGCTCCTTGGCTGATATGCTCGAACTGGCGCTGGCCCTGCAACGGCTCGG
TCTGCGGGTCGAACAGGTGCAGGACTTCACCCCTACTCCCGGCACCTGCGCTACATGCATGTATTACAGCGGAATTGATC
CTGAGACAGGGGAAAAGCTGTACGTGGCGACCAGCGACCGGGAGAAGGGGCTGCAGAAAGCGCTCCTGCTCGGCCATCTG
CCCGGGGAGCGCAAGAAGGTTCTCGAGGCTCTCGCTCTGCTGGGGCGGGAGGAGTTGGCCACTGTGTTGCTGACGGCGGG
CAGGTCGGAAGCGGTAAGCGCGAAGAGACCCCACTCCGTTGGGCAGGGAGTGATTCATCCCGGCAGGGAGAGAAAAGCTG
GGCGAGGAAAAGGCACAAAAAAAGCCCGCTGA

Upstream 100 bases:

>100_bases
CTCCTTTCGTGACCGCCCTGTTCACCCTGCTCGTCAACCCTGTCTGATTCCCCATTGACTCAGGCTGCAACCATCCCGCG
CGGAACGCGCCAGGAAACCC

Downstream 100 bases:

>100_bases
TTGCTCAGCGGGCTTTTTTATTCTCAGTTGAAAACGAAGGAATTAGCGAACCTTCACCACATTGGCGGACTGCAGGCCTT
TGGGGCCCTGGGTAATGTCG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 622

Protein sequence:

>623_residues
MAFIPTTRSEMHRRGWEQLDVIFVNGDAYVDHPAFGVPLLARWLEKHGFRVGVIAQPDWRSVEPFMALGRPRLFFAASAG
AMDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATLIYTSRLKEAFRDVPVVIGGIEASLRRFAHYDYWENRVRRSLLFD
AKADLLLYGMAERSMLELAQRMGRGESLADIRGLRGTCWVEKAGHHLTDHLEIPCFEECGSDRLKFAEAFRLASREQNPY
NGRTIVQRHGDRLLVCAPPSLPLEEAEMDSLYALPFEKAPHPSYGETIPAWEQIRCSITSHRGCFGGCSFCAIAMHQGKL
IQSRGQSSVESEIRELVRKPWFRGSISDIGGPTANMYGLSCGDSAAMKCCRRESCLFPKQCRHLIVDDRRAVRLLHAARD
FAGVRHVAVSSGVRYDLLERQPAYCRELIAHHVGGLLKVAPEHLVERVTMLMRKPGLAVFERFLSRFREESRRLGKPQGI
VPYLISGHPGCSLADMLELALALQRLGLRVEQVQDFTPTPGTCATCMYYSGIDPETGEKLYVATSDREKGLQKALLLGHL
PGERKKVLEALALLGREELATVLLTAGRSEAVSAKRPHSVGQGVIHPGRERKAGRGKGTKKAR

Sequences:

>Translated_623_residues
MAFIPTTRSEMHRRGWEQLDVIFVNGDAYVDHPAFGVPLLARWLEKHGFRVGVIAQPDWRSVEPFMALGRPRLFFAASAG
AMDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATLIYTSRLKEAFRDVPVVIGGIEASLRRFAHYDYWENRVRRSLLFD
AKADLLLYGMAERSMLELAQRMGRGESLADIRGLRGTCWVEKAGHHLTDHLEIPCFEECGSDRLKFAEAFRLASREQNPY
NGRTIVQRHGDRLLVCAPPSLPLEEAEMDSLYALPFEKAPHPSYGETIPAWEQIRCSITSHRGCFGGCSFCAIAMHQGKL
IQSRGQSSVESEIRELVRKPWFRGSISDIGGPTANMYGLSCGDSAAMKCCRRESCLFPKQCRHLIVDDRRAVRLLHAARD
FAGVRHVAVSSGVRYDLLERQPAYCRELIAHHVGGLLKVAPEHLVERVTMLMRKPGLAVFERFLSRFREESRRLGKPQGI
VPYLISGHPGCSLADMLELALALQRLGLRVEQVQDFTPTPGTCATCMYYSGIDPETGEKLYVATSDREKGLQKALLLGHL
PGERKKVLEALALLGREELATVLLTAGRSEAVSAKRPHSVGQGVIHPGRERKAGRGKGTKKAR
>Mature_622_residues
AFIPTTRSEMHRRGWEQLDVIFVNGDAYVDHPAFGVPLLARWLEKHGFRVGVIAQPDWRSVEPFMALGRPRLFFAASAGA
MDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATLIYTSRLKEAFRDVPVVIGGIEASLRRFAHYDYWENRVRRSLLFDA
KADLLLYGMAERSMLELAQRMGRGESLADIRGLRGTCWVEKAGHHLTDHLEIPCFEECGSDRLKFAEAFRLASREQNPYN
GRTIVQRHGDRLLVCAPPSLPLEEAEMDSLYALPFEKAPHPSYGETIPAWEQIRCSITSHRGCFGGCSFCAIAMHQGKLI
QSRGQSSVESEIRELVRKPWFRGSISDIGGPTANMYGLSCGDSAAMKCCRRESCLFPKQCRHLIVDDRRAVRLLHAARDF
AGVRHVAVSSGVRYDLLERQPAYCRELIAHHVGGLLKVAPEHLVERVTMLMRKPGLAVFERFLSRFREESRRLGKPQGIV
PYLISGHPGCSLADMLELALALQRLGLRVEQVQDFTPTPGTCATCMYYSGIDPETGEKLYVATSDREKGLQKALLLGHLP
GERKKVLEALALLGREELATVLLTAGRSEAVSAKRPHSVGQGVIHPGRERKAGRGKGTKKAR

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family

Homologues:

Organism=Escherichia coli, GI48994917, Length=640, Percent_Identity=43.4375, Blast_Score=538, Evalue=1e-154,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y556_PELPD (A1ALG7)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_900245.1
- STRING:   A1ALG7
- GeneID:   4572459
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_0556
- eggNOG:   COG1032
- HOGENOM:   HBG500854
- OMA:   FLPMSRA
- PhylomeDB:   A1ALG7
- ProtClustDB:   CLSK828983
- HAMAP:   MF_01251
- InterPro:   IPR006638
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946
- SMART:   SM00729

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N

EC number: NA

Molecular weight: Translated: 69663; Mature: 69532

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFIPTTRSEMHRRGWEQLDVIFVNGDAYVDHPAFGVPLLARWLEKHGFRVGVIAQPDWR
CCCCCCCHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCC
SVEPFMALGRPRLFFAASAGAMDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATLIYTS
CCCHHHHCCCCCEEEEECCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEHH
RLKEAFRDVPVVIGGIEASLRRFAHYDYWENRVRRSLLFDAKADLLLYGMAERSMLELAQ
HHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH
RMGRGESLADIRGLRGTCWVEKAGHHLTDHLEIPCFEECGSDRLKFAEAFRLASREQNPY
HHCCCCCHHHHHCCCCEEEHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCC
NGRTIVQRHGDRLLVCAPPSLPLEEAEMDSLYALPFEKAPHPSYGETIPAWEQIRCSITS
CCCCCEEECCCEEEEECCCCCCCCHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHC
HRGCFGGCSFCAIAMHQGKLIQSRGQSSVESEIRELVRKPWFRGSISDIGGPTANMYGLS
CCCCCCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEC
CGDSAAMKCCRRESCLFPKQCRHLIVDDRRAVRLLHAARDFAGVRHVAVSSGVRYDLLER
CCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC
QPAYCRELIAHHVGGLLKVAPEHLVERVTMLMRKPGLAVFERFLSRFREESRRLGKPQGI
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
VPYLISGHPGCSLADMLELALALQRLGLRVEQVQDFTPTPGTCATCMYYSGIDPETGEKL
CCEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHEECCCCCCCCCEE
YVATSDREKGLQKALLLGHLPGERKKVLEALALLGREELATVLLTAGRSEAVSAKRPHSV
EEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCC
GQGVIHPGRERKAGRGKGTKKAR
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFIPTTRSEMHRRGWEQLDVIFVNGDAYVDHPAFGVPLLARWLEKHGFRVGVIAQPDWR
CCCCCCHHHHHHCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCC
SVEPFMALGRPRLFFAASAGAMDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATLIYTS
CCCHHHHCCCCCEEEEECCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEHH
RLKEAFRDVPVVIGGIEASLRRFAHYDYWENRVRRSLLFDAKADLLLYGMAERSMLELAQ
HHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHH
RMGRGESLADIRGLRGTCWVEKAGHHLTDHLEIPCFEECGSDRLKFAEAFRLASREQNPY
HHCCCCCHHHHHCCCCEEEHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCC
NGRTIVQRHGDRLLVCAPPSLPLEEAEMDSLYALPFEKAPHPSYGETIPAWEQIRCSITS
CCCCCEEECCCEEEEECCCCCCCCHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHC
HRGCFGGCSFCAIAMHQGKLIQSRGQSSVESEIRELVRKPWFRGSISDIGGPTANMYGLS
CCCCCCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEEEC
CGDSAAMKCCRRESCLFPKQCRHLIVDDRRAVRLLHAARDFAGVRHVAVSSGVRYDLLER
CCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC
QPAYCRELIAHHVGGLLKVAPEHLVERVTMLMRKPGLAVFERFLSRFREESRRLGKPQGI
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
VPYLISGHPGCSLADMLELALALQRLGLRVEQVQDFTPTPGTCATCMYYSGIDPETGEKL
CCEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHEECCCCCCCCCEE
YVATSDREKGLQKALLLGHLPGERKKVLEALALLGREELATVLLTAGRSEAVSAKRPHSV
EEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCC
GQGVIHPGRERKAGRGKGTKKAR
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA