Click here to switch to the map view.

The map label for this gene is traB [H]

Identifier: 118578698

GI number: 118578698

Start: 254549

End: 255805

Strand: Reverse

Name: traB [H]

Synonym: Ppro_0255

Alternate gene names: 118578698

Gene position: 255805-254549 (Counterclockwise)

Preceding gene: 118578699

Following gene: 118578697

Centisome position: 6.38

GC content: 57.84

Gene sequence:

>1257_bases
ATGATGAAAGATAAGCTTCTGGCGTACTGGAACGGACTTGGTGGCGGCAAACGTAAAAATCTCGTCTGGTGCCTTACCGG
CAGCATTCTCGTTTTTGTATTCGCTGTTGGCTACTTTGCCATGAGCGGGGGGAAAGATCCCGCCATATCAATAAGCCCGA
AGCAGGTCCCCCTGAACATCGAACCGAAGCTCCTGGAAAAATCCCAGTTTCTTGAGAGCCAGAAAGAGATAGCCAAACGG
GACGACAAAGTTGCCGAACTCCAGAAAAAACTCGATGAAATTACCCGCGAAAAAAGGGGGGAAGTGCCGTCTGCTCCGGC
AGCGCCTGATTCTCTTCCCTCCGTCACCGGACAACCGCAGGGCCAGACTCAGAAGGCCGGTTCCGGCAGAGCGGCACTAT
CAAAGCAGTCGCTGCCGCCTCCTCCACCCGTGCCACAAGGCAGTACAATTTTGCTGCCTCCACCACCTGCTGCGTCGCAG
GGTATTCAGGCAGGGCAGATGCCGGATCCAGCCGAGACGGAACTTGGCAATATCTCCATAGTCTCGTCTCCCGTTTCCAG
TAAATCCGCCAAGCATGACGCGGAAGATAAAAAAAAAGACGCCGGAACGGTCTCCGTCTATCTGCCCCCTTCCTTTATGG
AGGCGACCCTGTTGAGTGGCTTGGACGCCCCCACCACTTCGGAAGCCAAAGGTAATCCGGTGCCGGTCCTGCTCAGGGTC
AAGACTCCGGCGGTCCTGCCCAACAGCGTCAAGGCCAACCTCAAGGGATGCTTCGTCATCGCTGACGGCAAGGGGAACCT
GGCCACCGAACGAGCCGAACTGCTGCTGGTCTCCCTGTCATGCCTCGACCGCAAGGGGCAGGCGGTGGTTGACCAGAAGG
TCAAAGGGTTCGTCGTGGACGCAGACGGCAAGATCGGCCTGCGCGGTCGGGTCGTGGCCAAAATGGGCTCCATGATTGCC
AGAAGCATGTTGGCCGGTTTTTTCGGCGGCGCCGGTGATGCCATCAAGGCGTCGGCCACCACCATGTCGGTAAGCCCACT
GGGGACCACCCAGACGGTAGATCCAAAGGATATCGCCATGGCCGGTGCCGGAACTGGCCTGTCCAGCGGCTTCAAGGAGA
TCCAGAAATTCTACATGGAACTGGCCAAACAGACCATGCCGGTCATCGAGGTAGGAGCCACCAAGCCGGTGACGCTGGTC
ATCAGCGAGGGGATCAACCTGCAAATCAAAAGGATCGCCAAGGGAGGCTCGGAGTGA

Upstream 100 bases:

>100_bases
CCGATGTTGGACCAGCCGCAACAGGGGCAGCCCGTTGCCAAACCCGGTCTTCAGAAAGATCCCCCCGTAAACCGCACCGA
ACAGGATGGCCAGGAGACTG

Downstream 100 bases:

>100_bases
AGAAAGTCCTCGCCGTCATAGGAATGCTGGCAATGGGCGGTTGTACCCTGCTCAACCCCTATGAAAGCAGTTTCAGTTGC
CCTGAAACCAGCAATGGCAA

Product: TraB pilus assembly family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MMKDKLLAYWNGLGGGKRKNLVWCLTGSILVFVFAVGYFAMSGGKDPAISISPKQVPLNIEPKLLEKSQFLESQKEIAKR
DDKVAELQKKLDEITREKRGEVPSAPAAPDSLPSVTGQPQGQTQKAGSGRAALSKQSLPPPPPVPQGSTILLPPPPAASQ
GIQAGQMPDPAETELGNISIVSSPVSSKSAKHDAEDKKKDAGTVSVYLPPSFMEATLLSGLDAPTTSEAKGNPVPVLLRV
KTPAVLPNSVKANLKGCFVIADGKGNLATERAELLLVSLSCLDRKGQAVVDQKVKGFVVDADGKIGLRGRVVAKMGSMIA
RSMLAGFFGGAGDAIKASATTMSVSPLGTTQTVDPKDIAMAGAGTGLSSGFKEIQKFYMELAKQTMPVIEVGATKPVTLV
ISEGINLQIKRIAKGGSE

Sequences:

>Translated_418_residues
MMKDKLLAYWNGLGGGKRKNLVWCLTGSILVFVFAVGYFAMSGGKDPAISISPKQVPLNIEPKLLEKSQFLESQKEIAKR
DDKVAELQKKLDEITREKRGEVPSAPAAPDSLPSVTGQPQGQTQKAGSGRAALSKQSLPPPPPVPQGSTILLPPPPAASQ
GIQAGQMPDPAETELGNISIVSSPVSSKSAKHDAEDKKKDAGTVSVYLPPSFMEATLLSGLDAPTTSEAKGNPVPVLLRV
KTPAVLPNSVKANLKGCFVIADGKGNLATERAELLLVSLSCLDRKGQAVVDQKVKGFVVDADGKIGLRGRVVAKMGSMIA
RSMLAGFFGGAGDAIKASATTMSVSPLGTTQTVDPKDIAMAGAGTGLSSGFKEIQKFYMELAKQTMPVIEVGATKPVTLV
ISEGINLQIKRIAKGGSE
>Mature_418_residues
MMKDKLLAYWNGLGGGKRKNLVWCLTGSILVFVFAVGYFAMSGGKDPAISISPKQVPLNIEPKLLEKSQFLESQKEIAKR
DDKVAELQKKLDEITREKRGEVPSAPAAPDSLPSVTGQPQGQTQKAGSGRAALSKQSLPPPPPVPQGSTILLPPPPAASQ
GIQAGQMPDPAETELGNISIVSSPVSSKSAKHDAEDKKKDAGTVSVYLPPSFMEATLLSGLDAPTTSEAKGNPVPVLLRV
KTPAVLPNSVKANLKGCFVIADGKGNLATERAELLLVSLSCLDRKGQAVVDQKVKGFVVDADGKIGLRGRVVAKMGSMIA
RSMLAGFFGGAGDAIKASATTMSVSPLGTTQTVDPKDIAMAGAGTGLSSGFKEIQKFYMELAKQTMPVIEVGATKPVTLV
ISEGINLQIKRIAKGGSE

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 43692; Mature: 43692

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKDKLLAYWNGLGGGKRKNLVWCLTGSILVFVFAVGYFAMSGGKDPAISISPKQVPLNI
CCCCCEEHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
EPKLLEKSQFLESQKEIAKRDDKVAELQKKLDEITREKRGEVPSAPAAPDSLPSVTGQPQ
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GQTQKAGSGRAALSKQSLPPPPPVPQGSTILLPPPPAASQGIQAGQMPDPAETELGNISI
CCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCCCCCCEEE
VSSPVSSKSAKHDAEDKKKDAGTVSVYLPPSFMEATLLSGLDAPTTSEAKGNPVPVLLRV
EECCCCCCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
KTPAVLPNSVKANLKGCFVIADGKGNLATERAELLLVSLSCLDRKGQAVVDQKVKGFVVD
CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHEEEEEHHHHCCCCCHHHCCCCCEEEEE
ADGKIGLRGRVVAKMGSMIARSMLAGFFGGAGDAIKASATTMSVSPLGTTQTVDPKDIAM
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCCCCCCHHHHEE
AGAGTGLSSGFKEIQKFYMELAKQTMPVIEVGATKPVTLVISEGINLQIKRIAKGGSE
ECCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCC
>Mature Secondary Structure
MMKDKLLAYWNGLGGGKRKNLVWCLTGSILVFVFAVGYFAMSGGKDPAISISPKQVPLNI
CCCCCEEHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
EPKLLEKSQFLESQKEIAKRDDKVAELQKKLDEITREKRGEVPSAPAAPDSLPSVTGQPQ
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
GQTQKAGSGRAALSKQSLPPPPPVPQGSTILLPPPPAASQGIQAGQMPDPAETELGNISI
CCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCCCCCCEEE
VSSPVSSKSAKHDAEDKKKDAGTVSVYLPPSFMEATLLSGLDAPTTSEAKGNPVPVLLRV
EECCCCCCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
KTPAVLPNSVKANLKGCFVIADGKGNLATERAELLLVSLSCLDRKGQAVVDQKVKGFVVD
CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHEEEEEHHHHCCCCCHHHCCCCCEEEEE
ADGKIGLRGRVVAKMGSMIARSMLAGFFGGAGDAIKASATTMSVSPLGTTQTVDPKDIAM
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCCCCCCHHHHEE
AGAGTGLSSGFKEIQKFYMELAKQTMPVIEVGATKPVTLVISEGINLQIKRIAKGGSE
ECCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]