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The map label for this gene is xerD [H]

Identifier: 118578673

GI number: 118578673

Start: 221196

End: 222284

Strand: Reverse

Name: xerD [H]

Synonym: Ppro_0229

Alternate gene names: 118578673

Gene position: 222284-221196 (Counterclockwise)

Preceding gene: 118578674

Following gene: 118578672

Centisome position: 5.55

GC content: 57.58

Gene sequence:

>1089_bases
ATGAATAATGATATCATCCCGACCGGTGGCCCCCATTCGGCACTGATCTCCAGCCAGATTCCGGACAACCTGCCAGCGGA
TCTTGAAGCCGCAGTACGCAACTGGCTGGAACGTGAAGTTGCCCTGGGTGATCCACGCGAAGACACGATCAAAACCTACA
CGTCCCACCTCAACCATTGGCTCCGCTGGTGTAACGCCCGTGGCATCACTCCGGCTGCCATGACCCAGGCCGATGTGGAG
AGCTTTCGCCATGAACTCATCCAGGCCGGCATGAAAGCATCGTCAATCGCGGTAAAGCTGACCGTCATCAGACGATTTTA
CCAGGTCGCCATGAACCGGGGGTTGATCACCATCAATCCGGCGGCAAATGTTCGCCCCCCTGTCGCACGGGAAGCTAAAT
CTGAGCAAAAGCACCTTACCGCCGGCCAGGCGGAACTGCTGATCATGCACCTTCCCGAACTGGGCAGCATCAAGGGATTG
CGCGACCGGGCCATCATAGCCCTTATGCTGCTCGAAGGGCTCCGCCGTGTCGAAATCAAACGGGCCAACGTCGAAGACAT
CGAAGACGTTGAGGGTGGTGTGCGCATTCTGGTCCACGGCAAGCGCAAAGATGGTTATATCTATCCCCGGGAAGATACTG
TGGCCGCCATCCGGGCCTACCTTGCGGCCAGGGGTGAGGTAACCGTCGAGGAAACCACCATCCATAACCGGCAAGCGTTC
GTTACGCCAATGTTTCTCAGCGTACGCAAGAATGGCCGAGGCAGGGGCCGGATATCGCGCATCGGCCTCAATAGTGTCAT
TGACGGTTACCTGAGCAAAGCCGGCCTGAAACGGAAACGGGTTTCCTGCCATGCTCTGCGGCACACCTGCGGCACAATGC
TATACGATGTCACCAAGGACATCCGGGCTGTTCAGGATACGTTACGCCATGAGGACATCAGCACCAGCGCCATCTATGCC
GCCAGTGGCCGGGAGCATAAACGCTTCACCAGGAAAATTCCTCTGGCAATCACTACGGCACCGACACCGCCGGTTGGTGA
TTCTTGCATACCATCCGCTCCTGACCAGGAGACAGAGGAGTCGCCATGA

Upstream 100 bases:

>100_bases
CTCTACCATGGCCCCCCTCGGGAAGTCATGGCATTCATCAACGGGTTTGTCAGCGCCGTAGCGCACACTTCACTTACCAG
CATCGAATCGGAGCATCCGC

Downstream 100 bases:

>100_bases
TTCTCTGGGACCACGAAGGCAAACCCGTTGTCTGTGATCATAAGGATCTCACCCCTGGGGTGCTGACCATGATTTCCGGG
ATAAGCGACCGCTTCGATCG

Product: phage integrase domain/SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MNNDIIPTGGPHSALISSQIPDNLPADLEAAVRNWLEREVALGDPREDTIKTYTSHLNHWLRWCNARGITPAAMTQADVE
SFRHELIQAGMKASSIAVKLTVIRRFYQVAMNRGLITINPAANVRPPVAREAKSEQKHLTAGQAELLIMHLPELGSIKGL
RDRAIIALMLLEGLRRVEIKRANVEDIEDVEGGVRILVHGKRKDGYIYPREDTVAAIRAYLAARGEVTVEETTIHNRQAF
VTPMFLSVRKNGRGRGRISRIGLNSVIDGYLSKAGLKRKRVSCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIYA
ASGREHKRFTRKIPLAITTAPTPPVGDSCIPSAPDQETEESP

Sequences:

>Translated_362_residues
MNNDIIPTGGPHSALISSQIPDNLPADLEAAVRNWLEREVALGDPREDTIKTYTSHLNHWLRWCNARGITPAAMTQADVE
SFRHELIQAGMKASSIAVKLTVIRRFYQVAMNRGLITINPAANVRPPVAREAKSEQKHLTAGQAELLIMHLPELGSIKGL
RDRAIIALMLLEGLRRVEIKRANVEDIEDVEGGVRILVHGKRKDGYIYPREDTVAAIRAYLAARGEVTVEETTIHNRQAF
VTPMFLSVRKNGRGRGRISRIGLNSVIDGYLSKAGLKRKRVSCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIYA
ASGREHKRFTRKIPLAITTAPTPPVGDSCIPSAPDQETEESP
>Mature_362_residues
MNNDIIPTGGPHSALISSQIPDNLPADLEAAVRNWLEREVALGDPREDTIKTYTSHLNHWLRWCNARGITPAAMTQADVE
SFRHELIQAGMKASSIAVKLTVIRRFYQVAMNRGLITINPAANVRPPVAREAKSEQKHLTAGQAELLIMHLPELGSIKGL
RDRAIIALMLLEGLRRVEIKRANVEDIEDVEGGVRILVHGKRKDGYIYPREDTVAAIRAYLAARGEVTVEETTIHNRQAF
VTPMFLSVRKNGRGRGRISRIGLNSVIDGYLSKAGLKRKRVSCHALRHTCGTMLYDVTKDIRAVQDTLRHEDISTSAIYA
ASGREHKRFTRKIPLAITTAPTPPVGDSCIPSAPDQETEESP

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerC binding sites by a short central region, forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=294, Percent_Identity=27.2108843537415, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40133; Mature: 40133

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNDIIPTGGPHSALISSQIPDNLPADLEAAVRNWLEREVALGDPREDTIKTYTSHLNHW
CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LRWCNARGITPAAMTQADVESFRHELIQAGMKASSIAVKLTVIRRFYQVAMNRGLITINP
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEECC
AANVRPPVAREAKSEQKHLTAGQAELLIMHLPELGSIKGLRDRAIIALMLLEGLRRVEIK
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RANVEDIEDVEGGVRILVHGKRKDGYIYPREDTVAAIRAYLAARGEVTVEETTIHNRQAF
CCCCHHHHHCCCCEEEEEECCCCCCEECCCHHHHHHHHHHHHHCCCEEEEHHEECCCHHH
VTPMFLSVRKNGRGRGRISRIGLNSVIDGYLSKAGLKRKRVSCHALRHTCGTMLYDVTKD
HHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IRAVQDTLRHEDISTSAIYAASGREHKRFTRKIPLAITTAPTPPVGDSCIPSAPDQETEE
HHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCC
SP
CC
>Mature Secondary Structure
MNNDIIPTGGPHSALISSQIPDNLPADLEAAVRNWLEREVALGDPREDTIKTYTSHLNHW
CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LRWCNARGITPAAMTQADVESFRHELIQAGMKASSIAVKLTVIRRFYQVAMNRGLITINP
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEECC
AANVRPPVAREAKSEQKHLTAGQAELLIMHLPELGSIKGLRDRAIIALMLLEGLRRVEIK
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RANVEDIEDVEGGVRILVHGKRKDGYIYPREDTVAAIRAYLAARGEVTVEETTIHNRQAF
CCCCHHHHHCCCCEEEEEECCCCCCEECCCHHHHHHHHHHHHHCCCEEEEHHEECCCHHH
VTPMFLSVRKNGRGRGRISRIGLNSVIDGYLSKAGLKRKRVSCHALRHTCGTMLYDVTKD
HHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IRAVQDTLRHEDISTSAIYAASGREHKRFTRKIPLAITTAPTPPVGDSCIPSAPDQETEE
HHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCC
SP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]