Click here to switch to the map view.

The map label for this gene is cmoB [H]

Identifier: 118578488

GI number: 118578488

Start: 46556

End: 47305

Strand: Direct

Name: cmoB [H]

Synonym: Ppro_0040

Alternate gene names: 118578488

Gene position: 46556-47305 (Clockwise)

Preceding gene: 118578487

Following gene: 118578489

Centisome position: 1.16

GC content: 46.53

Gene sequence:

>750_bases
ATGAATACCAGAGAAGCATTGCAACAAGAAGTGGATAAGTTCCCCTACTGGTATCACAGAATAGAACTACCATTTGGCAT
CGTAACACCTGGTTGGGCTCCTATCAATGCAGCCGCATACGGTATCCCGCAGTCACTGCACGACAAGCGTATATTGGATA
TTGGAGCCTGGGACGGATACTGGACATTCGAGGCGTTAAAACGTGGCGCTGCACAGGTTGTTGCCATCGACGATTTTTCA
GACTACTTGGGAACTCTTGATCAGTCTCAAAGAGTGGCTTGGAAAACTTTTGATTTTTGCAGAGATGCATTGGGATATGC
CATTCAACGCTGCCCACGTATTGACATGTCGGTCTATGACCTGAATGTGGAAAGGCACGGGCTTTTTGACACTGTATTCT
TTTTTGGAACGCTCTATCATCTTCGCTACCCGCTTCTCGCACTGGACAAGATTTCGTCGGTATGTCGAGGCGAAATCTAT
GTTGAATCTGCTATCCTTGACGACTTCAGTCCCTATCATGGTGGACTTGGGCACGGTCTTAAAAACAGTGTGGCAATGGA
ATTTTACCCTGAAAATCAGTATGCAAACAACAATTCAAACTGGTGGGTACCGACCTTAGCCTGTCTCGCCCAAATGGTTC
GTGCGGCAGGTTTTGACGATGTGACCGGGTGGAAATTGACCGAGAACCCTAATAACCTGAGTATGTGCAGGGGGTTTGTA
AAAGGTAGAAAAACAAAGTCCTCGTATTGA

Upstream 100 bases:

>100_bases
CTGAAAAACGAATCAACAAGGCCTGACAATGAGTGTCACTGGCCGTCGATCATGTGCGGGTTTCTAACTCCGACTTTAGA
GACAACAGAGGAGAATCGTT

Downstream 100 bases:

>100_bases
TTGCAGATACGTTAGTCGCTACGAAAAACCATATAATGTAAAAGGAGAAATACTGAAATGTCAGAATATGATTACGTCGT
CAAGGATATGTCCCTGGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNTREALQQEVDKFPYWYHRIELPFGIVTPGWAPINAAAYGIPQSLHDKRILDIGAWDGYWTFEALKRGAAQVVAIDDFS
DYLGTLDQSQRVAWKTFDFCRDALGYAIQRCPRIDMSVYDLNVERHGLFDTVFFFGTLYHLRYPLLALDKISSVCRGEIY
VESAILDDFSPYHGGLGHGLKNSVAMEFYPENQYANNNSNWWVPTLACLAQMVRAAGFDDVTGWKLTENPNNLSMCRGFV
KGRKTKSSY

Sequences:

>Translated_249_residues
MNTREALQQEVDKFPYWYHRIELPFGIVTPGWAPINAAAYGIPQSLHDKRILDIGAWDGYWTFEALKRGAAQVVAIDDFS
DYLGTLDQSQRVAWKTFDFCRDALGYAIQRCPRIDMSVYDLNVERHGLFDTVFFFGTLYHLRYPLLALDKISSVCRGEIY
VESAILDDFSPYHGGLGHGLKNSVAMEFYPENQYANNNSNWWVPTLACLAQMVRAAGFDDVTGWKLTENPNNLSMCRGFV
KGRKTKSSY
>Mature_249_residues
MNTREALQQEVDKFPYWYHRIELPFGIVTPGWAPINAAAYGIPQSLHDKRILDIGAWDGYWTFEALKRGAAQVVAIDDFS
DYLGTLDQSQRVAWKTFDFCRDALGYAIQRCPRIDMSVYDLNVERHGLFDTVFFFGTLYHLRYPLLALDKISSVCRGEIY
VESAILDDFSPYHGGLGHGLKNSVAMEFYPENQYANNNSNWWVPTLACLAQMVRAAGFDDVTGWKLTENPNNLSMCRGFV
KGRKTKSSY

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA [H]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010017 [H]

Pfam domain/function: PF08003 Methyltransf_9 [H]

EC number: NA

Molecular weight: Translated: 28424; Mature: 28424

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTREALQQEVDKFPYWYHRIELPFGIVTPGWAPINAAAYGIPQSLHDKRILDIGAWDGY
CCHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCCHHHHCCCHHHCCCEEEEECCCCCC
WTFEALKRGAAQVVAIDDFSDYLGTLDQSQRVAWKTFDFCRDALGYAIQRCPRIDMSVYD
HHHHHHHCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LNVERHGLFDTVFFFGTLYHLRYPLLALDKISSVCRGEIYVESAILDDFSPYHGGLGHGL
ECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHCCCCCCCCCCCCC
KNSVAMEFYPENQYANNNSNWWVPTLACLAQMVRAAGFDDVTGWKLTENPNNLSMCRGFV
CCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHH
KGRKTKSSY
HCCCCCCCC
>Mature Secondary Structure
MNTREALQQEVDKFPYWYHRIELPFGIVTPGWAPINAAAYGIPQSLHDKRILDIGAWDGY
CCHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCCHHHHCCCHHHCCCEEEEECCCCCC
WTFEALKRGAAQVVAIDDFSDYLGTLDQSQRVAWKTFDFCRDALGYAIQRCPRIDMSVYD
HHHHHHHCCCEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LNVERHGLFDTVFFFGTLYHLRYPLLALDKISSVCRGEIYVESAILDDFSPYHGGLGHGL
ECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHCCCCCCCCCCCCC
KNSVAMEFYPENQYANNNSNWWVPTLACLAQMVRAAGFDDVTGWKLTENPNNLSMCRGFV
CCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHH
KGRKTKSSY
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA