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The map label for this gene is lytT [H]

Identifier: 118480448

GI number: 118480448

Start: 5180926

End: 5181654

Strand: Reverse

Name: lytT [H]

Synonym: BALH_4920

Alternate gene names: 118480448

Gene position: 5181654-5180926 (Counterclockwise)

Preceding gene: 118480449

Following gene: 118480447

Centisome position: 98.57

GC content: 29.63

Gene sequence:

>729_bases
GTGGTTGAAGAAATGAAAATTTTACTGATTATGGAAGAAGTAGAAGAGCGAAGAAGTTTAGCTGAAAAATTTACTGAAAA
TATAAGGAATGTAGAATGTTTTGAAGCAAATACAGGAACAGAATCATTATTTATGATGAAGAAACATACACCAGATTTTG
TTTTTTTAAATTCAAAATTAATAGATGGAACTGGTTTTGAATATGCGAGTTTATTACGGGAAGTAAATTGTTATACGAAA
TTTATTTTTATGGGTGAAGATATAGAAGAGTCCATTACGGCATTTCGTTTTCAAGCATTTTATTATTTACTACGCCCATT
TCGCGAAGAAGATTTGCAGTTCCTTTTATATAGAATGGGTAAAGAGCAAGGTGAGAAAGCGAAGAGTTATTTACGAAAAC
TACCGATAGAAGGTCAAGAGGGGATTAGGTATATTTTTCCTGGTGATATTGTATATGTAAGCAAAAATAAGGAAAACAAA
ACGGTTTCAATTTATACAACAAATAATCAGTATATTTCAACATATACACTTCAGGAGCTAGAAAATAAGCTAAATGCATA
TGATTTTTTACGTGTGCATAAAAGTTATTTAATTAATATGTCATATGTACAAGAGTTAAAGCCTTACTATAATGGCACAT
ATAATCTATATTTAGATAAATATGATGAGCAACCGATTCCAGTTAGTCGTAATTATGTGAAACGACTTCGAAATAAAATT
GAATTGTAG

Upstream 100 bases:

>100_bases
TTTTTCTGTTTTTTTAGATAAATAATGGTATAGTAAGAAAAAGGGAATGTTCTTTATAAAAGCGAATGTATACAACAGGA
CATACGGACAAAAGAATTAG

Downstream 100 bases:

>100_bases
CAGATAATGCAATTTTTTTAACATGATAAACTAAAAATCCTTCATGATAGGGAGGATTCAAGTTAAATATTCAGAAAATT
TAGTACAATCCCACTAAGAA

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MVEEMKILLIMEEVEERRSLAEKFTENIRNVECFEANTGTESLFMMKKHTPDFVFLNSKLIDGTGFEYASLLREVNCYTK
FIFMGEDIEESITAFRFQAFYYLLRPFREEDLQFLLYRMGKEQGEKAKSYLRKLPIEGQEGIRYIFPGDIVYVSKNKENK
TVSIYTTNNQYISTYTLQELENKLNAYDFLRVHKSYLINMSYVQELKPYYNGTYNLYLDKYDEQPIPVSRNYVKRLRNKI
EL

Sequences:

>Translated_242_residues
MVEEMKILLIMEEVEERRSLAEKFTENIRNVECFEANTGTESLFMMKKHTPDFVFLNSKLIDGTGFEYASLLREVNCYTK
FIFMGEDIEESITAFRFQAFYYLLRPFREEDLQFLLYRMGKEQGEKAKSYLRKLPIEGQEGIRYIFPGDIVYVSKNKENK
TVSIYTTNNQYISTYTLQELENKLNAYDFLRVHKSYLINMSYVQELKPYYNGTYNLYLDKYDEQPIPVSRNYVKRLRNKI
EL
>Mature_242_residues
MVEEMKILLIMEEVEERRSLAEKFTENIRNVECFEANTGTESLFMMKKHTPDFVFLNSKLIDGTGFEYASLLREVNCYTK
FIFMGEDIEESITAFRFQAFYYLLRPFREEDLQFLLYRMGKEQGEKAKSYLRKLPIEGQEGIRYIFPGDIVYVSKNKENK
TVSIYTTNNQYISTYTLQELENKLNAYDFLRVHKSYLINMSYVQELKPYYNGTYNLYLDKYDEQPIPVSRNYVKRLRNKI
EL

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082052, Length=246, Percent_Identity=26.8292682926829, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788724, Length=246, Percent_Identity=23.1707317073171, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28965; Mature: 28965

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEEMKILLIMEEVEERRSLAEKFTENIRNVECFEANTGTESLFMMKKHTPDFVFLNSKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCCEEEEECEE
IDGTGFEYASLLREVNCYTKFIFMGEDIEESITAFRFQAFYYLLRPFREEDLQFLLYRMG
ECCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
KEQGEKAKSYLRKLPIEGQEGIRYIFPGDIVYVSKNKENKTVSIYTTNNQYISTYTLQEL
HHCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEHHHHH
ENKLNAYDFLRVHKSYLINMSYVQELKPYYNGTYNLYLDKYDEQPIPVSRNYVKRLRNKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHC
EL
CC
>Mature Secondary Structure
MVEEMKILLIMEEVEERRSLAEKFTENIRNVECFEANTGTESLFMMKKHTPDFVFLNSKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEECCCCCEEEEECEE
IDGTGFEYASLLREVNCYTKFIFMGEDIEESITAFRFQAFYYLLRPFREEDLQFLLYRMG
ECCCCHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
KEQGEKAKSYLRKLPIEGQEGIRYIFPGDIVYVSKNKENKTVSIYTTNNQYISTYTLQEL
HHCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEHHHHH
ENKLNAYDFLRVHKSYLINMSYVQELKPYYNGTYNLYLDKYDEQPIPVSRNYVKRLRNKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHC
EL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]