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The map label for this gene is ydcM [C]

Identifier: 118480268

GI number: 118480268

Start: 4977136

End: 4978266

Strand: Reverse

Name: ydcM [C]

Synonym: BALH_4727

Alternate gene names: 118480268

Gene position: 4978266-4977136 (Counterclockwise)

Preceding gene: 118480269

Following gene: 118480267

Centisome position: 94.7

GC content: 35.28

Gene sequence:

>1131_bases
ATGATATTGGCGAAGAAAGTCAGACTGATTCCAACGCCTGAACAAGAAAAATTGCTTAGAAACCATGCCGGTGCTGCGAG
ATTTGCTTATAACTATTGTAAAAGAATGAGTGATAGATACTATAAGCTATTTGGAAAATCTGTTTCACAGTTAGCTTTAC
AGAAACGATTTACAAAGATCAAGAAGCGAAAGAAATATGAGTGGTTAAAAGACATTAATGCACAAGTTCCCAAACAGGCT
TCAAAAGATTTTGATATGGCGAGAAAACATTCGTTCAAAAAGTACAAAAATGGTTATCACACTTCTTATAAATCCAAAAA
AGATTTGATTCAAGGATTTTATGCCAATTATGAAAGACTGATTATAGGAAAGAAAGTCGTTCATATTCAGTCTATTGGAG
AAGTGAAAACAAGCCAACAACTACCAAGAAATGAAAAACCATCCAATCCAAGAGTTACCTTTGATGGTCGTCACTGGTGG
ATTAGTGTAGGATTCCAAGAAGACTTTGAATCACAAGAACTAACGAATGAGTCGATTGGTGTGGATGTTGGTTTAAAAGA
ACTTTTTGTAGCTTCTAATGGTATGAAAGAACGAAATATAAACAAAGATGCCAAGGTTAAAAAACTTTTGAGAAGGAAAA
AGTCAGCGCAAAGAGATATGTCTAGGAGATTTAAAAAAGGTGTAAAAATTCAATCTGCTGGATATGAAAAAGCGAAAGCG
GAGCACCTGCGGTTATCTAGGAAAATTATGAATATCCGAAATAACCATATCCATCAAGCAACAGCTAAATTGGTGAAAAC
CAAACCAATGAGAATTGTTGTGGAAGACTTATCTATCTCAAACCTGTTAAAAAACAAAAAACTATCGAAAGCATTTTCAT
TTCAAAAATTACACTTCTTCTTTCAATGTTTATCATACAAGTGCGAGAGGTACGGCATTGCGTATGTAAAAGCTGATAAA
TGGTTCGCCTCAAGCAAGATCTGTTCATGTTGCGGCGTAAAATACGACCATTCAGTTCAACCAGAAGGACAGTGGAGTTT
AAAAATACGTGAGTGGTGTTGTGCTTCATGCAATAGCCATCACGATCGGGATGTAAATGCGTCGATAAATTTATCAAGAT
GGGTAAAATAA

Upstream 100 bases:

>100_bases
CGGAATTAACAGGTTTGTATCCTGGTAGTCTCAGGAGAATGCTGGTGGAACACGCTACGATTCAGAAGAACAAATCTTTC
ATTAAAGGAGTTACATTCTG

Downstream 100 bases:

>100_bases
ATGCTTGATAATAGGAGGTAACGATACTGCCTCGTGTGGAGTGTTATACCCCTCGTCCCCTCGGGGTTGCGAGAACACGA
TGAAGCACTAACTTGTGTAA

Product: IS605 family transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MILAKKVRLIPTPEQEKLLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKIKKRKKYEWLKDINAQVPKQA
SKDFDMARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERLIIGKKVVHIQSIGEVKTSQQLPRNEKPSNPRVTFDGRHWW
ISVGFQEDFESQELTNESIGVDVGLKELFVASNGMKERNINKDAKVKKLLRRKKSAQRDMSRRFKKGVKIQSAGYEKAKA
EHLRLSRKIMNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFSFQKLHFFFQCLSYKCERYGIAYVKADK
WFASSKICSCCGVKYDHSVQPEGQWSLKIREWCCASCNSHHDRDVNASINLSRWVK

Sequences:

>Translated_376_residues
MILAKKVRLIPTPEQEKLLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKIKKRKKYEWLKDINAQVPKQA
SKDFDMARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERLIIGKKVVHIQSIGEVKTSQQLPRNEKPSNPRVTFDGRHWW
ISVGFQEDFESQELTNESIGVDVGLKELFVASNGMKERNINKDAKVKKLLRRKKSAQRDMSRRFKKGVKIQSAGYEKAKA
EHLRLSRKIMNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFSFQKLHFFFQCLSYKCERYGIAYVKADK
WFASSKICSCCGVKYDHSVQPEGQWSLKIREWCCASCNSHHDRDVNASINLSRWVK
>Mature_376_residues
MILAKKVRLIPTPEQEKLLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKIKKRKKYEWLKDINAQVPKQA
SKDFDMARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERLIIGKKVVHIQSIGEVKTSQQLPRNEKPSNPRVTFDGRHWW
ISVGFQEDFESQELTNESIGVDVGLKELFVASNGMKERNINKDAKVKKLLRRKKSAQRDMSRRFKKGVKIQSAGYEKAKA
EHLRLSRKIMNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFSFQKLHFFFQCLSYKCERYGIAYVKADK
WFASSKICSCCGVKYDHSVQPEGQWSLKIREWCCASCNSHHDRDVNASINLSRWVK

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=369, Percent_Identity=23.5772357723577, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44017; Mature: 44017

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILAKKVRLIPTPEQEKLLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKI
CCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKRKKYEWLKDINAQVPKQASKDFDMARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHE
IIGKKVVHIQSIGEVKTSQQLPRNEKPSNPRVTFDGRHWWISVGFQEDFESQELTNESIG
EHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEECCCHHCCCHHHHCCCCCC
VDVGLKELFVASNGMKERNINKDAKVKKLLRRKKSAQRDMSRRFKKGVKIQSAGYEKAKA
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHH
EHLRLSRKIMNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFSFQKLHFF
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
FQCLSYKCERYGIAYVKADKWFASSKICSCCGVKYDHSVQPEGQWSLKIREWCCASCNSH
HHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHCCCC
HDRDVNASINLSRWVK
CCCCCCCCCCHHHCCC
>Mature Secondary Structure
MILAKKVRLIPTPEQEKLLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKI
CCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKRKKYEWLKDINAQVPKQASKDFDMARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHE
IIGKKVVHIQSIGEVKTSQQLPRNEKPSNPRVTFDGRHWWISVGFQEDFESQELTNESIG
EHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEECCCHHCCCHHHHCCCCCC
VDVGLKELFVASNGMKERNINKDAKVKKLLRRKKSAQRDMSRRFKKGVKIQSAGYEKAKA
CCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHH
EHLRLSRKIMNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFSFQKLHFF
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
FQCLSYKCERYGIAYVKADKWFASSKICSCCGVKYDHSVQPEGQWSLKIREWCCASCNSH
HHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHCCCC
HDRDVNASINLSRWVK
CCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]