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The map label for this gene is ymfC [H]

Identifier: 118479013

GI number: 118479013

Start: 3631064

End: 3631804

Strand: Reverse

Name: ymfC [H]

Synonym: BALH_3421

Alternate gene names: 118479013

Gene position: 3631804-3631064 (Counterclockwise)

Preceding gene: 118479014

Following gene: 118479012

Centisome position: 69.08

GC content: 36.98

Gene sequence:

>741_bases
ATGCGGGGGAGTCTTATGTCAGTAAAATCCGATAGTCGTCACCTATATTTACGGGTGATTGATCACATCAAAGAAAAGAT
TAAAGATGGGGCTTACAAAGAAAGGCAAAAGTTGCCATCAGAGTTTGATTTAGCGAAAGAACTTGGCGTAAGTAGAGCGA
CTTTAAGGGAAGCGCTGCGTATTTTAGAAGAAGAAAATGTTGTCATTCGTAGACATGGTGTAGGAACATTTGTAAATGCA
AAACCGCTATTTTCTTCTGGGATTGAACAACTTTCTAGTATTACAGATATGATTTCTAGTGTGGGGAAAACACCAGGAAC
TATCTTTTTATCATCATCTACAACAAGTTTAACAGAAGAAGAAAAAGAGAAGTTTAATAGTGAAGATGGTTTTAATGCAG
TGATGATTGAGCGTGTGCGTACAGCAGATGGGGAACCTGTTGTATATTGTATCGATAAACTTGCAAAAGAAATCTTGCCA
GATTTATCGGGATACAACGAAGAATCATTGCTTACAGTGATACATAACAATACGCACAAACGTATCACATACGCAGTTGC
TCATATTGAGCCAATTGGCTATCATCCGAAAATCTCACCAATTTTAGAATGTGAACCGGAAACGGCACTGCTAGTATTAA
AACAAATGCACTATGATCAAAATGATGAGCCAATCTTATATTCTATCAATTACTTTAGAGCTGATAAGTTTAGCTTCCAC
GTACTAAGAAAACGTATGTAG

Upstream 100 bases:

>100_bases
ATTCGACAATTATGTTTATTTTTAGTGTGTAGCAATTTTTATTATGTTGTAAGTTGAAAAAAGAGAAAAGAAGTCTTACA
TCAGAGGTCGAATAATTGAA

Downstream 100 bases:

>100_bases
GTAAGTTCCTTTTTAGGGAGGTGACAGCAAGAAGTTAGGGACAGCAGCGTATAAAAAATAGACAAATCATTTCAGGAGGG
GTTTCTAGTATGAAGAAAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MRGSLMSVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNA
KPLFSSGIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEEEKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILP
DLSGYNEESLLTVIHNNTHKRITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFH
VLRKRM

Sequences:

>Translated_246_residues
MRGSLMSVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNA
KPLFSSGIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEEEKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILP
DLSGYNEESLLTVIHNNTHKRITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFH
VLRKRM
>Mature_246_residues
MRGSLMSVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALRILEEENVVIRRHGVGTFVNA
KPLFSSGIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEEEKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILP
DLSGYNEESLLTVIHNNTHKRITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFH
VLRKRM

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=235, Percent_Identity=26.3829787234043, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082252, Length=240, Percent_Identity=25.4166666666667, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28012; Mature: 28012

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSLMSVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
ILEEENVVIRRHGVGTFVNAKPLFSSGIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEE
HHHCCCEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
EKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGYNEESLLTVIHNNTHK
HHHHCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
RITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFH
EEEEEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHH
VLRKRM
HHHHCC
>Mature Secondary Structure
MRGSLMSVKSDSRHLYLRVIDHIKEKIKDGAYKERQKLPSEFDLAKELGVSRATLREALR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
ILEEENVVIRRHGVGTFVNAKPLFSSGIEQLSSITDMISSVGKTPGTIFLSSSTTSLTEE
HHHCCCEEEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
EKEKFNSEDGFNAVMIERVRTADGEPVVYCIDKLAKEILPDLSGYNEESLLTVIHNNTHK
HHHHCCCCCCCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
RITYAVAHIEPIGYHPKISPILECEPETALLVLKQMHYDQNDEPILYSINYFRADKFSFH
EEEEEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHHH
VLRKRM
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]